New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	892835 =	31 (1.050)	4 (0.140)	4/244	NT	11.6%	coding (883/2088 nt)	pta	phosphate acetyltransferase
	?	NC_002947	892868 =	30 (1.020)					coding (850/2088 nt)	pta	phosphate acetyltransferase

AATGAACTCGGCACGCTCGCGGTCGTCCACCGGGATTTCGCGGTTCAGCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAGCGGGACCGT  >  NC_002947/892686‑892970                                                                                                                                                      |                                                                                                                                        gcggcgcatgagcaagatcatcctcttgccacgcacggtgcccaacacggtcccgctactgacctcgggcaccctggtggtaaccccgggcgaccgcgacgacatcatcctcgctgtcagcctggcagcgatcaatggcgtccccctggc                                                                                                                                         >  1:599089‑M1/150‑150 (MQ=255)               gCTCGCGGTCGTCCACCGGGATTTCGCGGTTCAGCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGc                                                                                                                           <  1:452434/150‑1 (MQ=255)                 ccgcgGTCGTCCACCGGGATTTCGCGGTTCAGCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTg                                                                                                                         <  2:65660/149‑1 (MQ=255)                   gcgGTCGTCCACCGGGATTTCGCGGTTCAGCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTcagcctg                                                                                                                       >  2:357053/1‑144 (MQ=255)                             aCCGGGATTTCGCGGTTCAGCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAg                                                                                                             >  1:636591/1‑150 (MQ=255)                                  gATTTCGCGGTTCAGCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACACACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGc                                                                                                        >  1:208629/1‑150 (MQ=255)                                    tttCGCGGTTCAGAGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCa                                                                                                      >  2:469289/1‑150 (MQ=255)                                      tCGCGGTTCAGCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGAGCGGCAGGCCGGCCTGCGGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAgg                                                                                                    >  2:204517/1‑150 (MQ=255)                                                gCGAGTTGAGCTGGTTGGTGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCAt                                                                                          >  1:279457/1‑150 (MQ=255)                                                gCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCAt                                                                                          <  2:789376/150‑1 (MQ=255)                                                         gCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCt                                                                                  <  2:780214/149‑1 (MQ=255)                                                         gCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCt                                                                                  >  1:780214/1‑149 (MQ=255)                                                              ttGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAgg                                                                            >  2:146215/1‑150 (MQ=255)                                                                          tACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAggg                                                                                                   >  1:77969/1‑115 (MQ=255)                                                                          tACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAggg                                                                                                   <  2:77969/115‑1 (MQ=255)                                                                                           cGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTc                                               >  1:509074/1‑150 (MQ=255)                                                                                           cGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTc                                               <  2:509074/150‑1 (MQ=255)                                                                                            gaccgcgacgacatcatcctcgctgtcagcctggcagcgatcaatggcgtccccctggCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAggg                                                                                                   <  1:623346‑M1/39‑1 (MQ=255)                                                                                            gaccgcgacgacatcatcctcgctgtcagcctggcagcgatcaatggcgtccccctggCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAggg                                                                                                   >  2:623346‑M1/59‑97 (MQ=255)                                                                                            gAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCg                                              >  2:54284/1‑150 (MQ=255)                                                                                                  aTCGGCAGGCCGGCCTGAAGGGCACCGCGGGACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCggg                                        <  2:208629/150‑1 (MQ=255)                                                                                                         tcatcctcgctgtcagcctggcagcgatcaatggcgtccccctggCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCAtt                                                                                         >  1:523836‑M1/46‑94 (MQ=255)                                                                                                         tcatcctcgctgtcagcctggcagcgatcaatggcgtccccctggCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCAtt                                                                                         <  2:523836‑M1/49‑1 (MQ=255)                                                                                                              gccTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCt                                                                          >  2:214844/1‑104 (MQ=255)                                                                                                              gccTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCt                                                                          <  1:214844/104‑1 (MQ=255)                                                                                                                           cgcgGCACAGGCCAAGGATACGCACGTCAGGCTTACTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCTGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGCGGTTACCACCAGGGTGCCCGAGGTCa               >  2:190505/1‑150 (MQ=255)                                                                                                                               gCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAg           <  1:146215/150‑1 (MQ=255)                                                                                                                                     gCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAGCgggcc     >  2:729232/1‑148 (MQ=255)                                                                                                                                      ccAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGCACTCGTGGCTGGCGCCAGGGGTTACCACCAGGGTGCGCGCGGACGCTAGCGCGAcc    >  2:188547/1‑150 (MQ=255)                                                                                                                                        aaGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGa                                                                  >  2:369322/1‑86 (MQ=255)                                                                                                                                        aaGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGa                                                                  <  1:369322/86‑1 (MQ=255)                                                                                                                                        aaGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCACTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAGCGGGACCgt  >  1:708563/1‑150 (MQ=255)                                                                                                                                           gATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAGCg         >  2:281289/1‑140 (MQ=255)                                                                                                                                           gATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAGCg         <  1:281289/140‑1 (MQ=255)                                                                                                                                                gCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAGCGGGACCgt  >  2:156142/1‑142 (MQ=255)                                                                                                                                                gCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAGCGGGACCgt  <  1:156142/142‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                        AATGAACTCGGCACGCTCGCGGTCGTCCACCGGGATTTCGCGGTTCAGCGAGTTGAGCTGGTTGGCGGTGTCGTACGAGCCGGTGCTGACCGAAAGGATCGGCAGGCCGGCCTGCAGGGCACCGCGGCACAGGCCAAGGATACGCACGTCAGGCTTGCTGTCGCTGGTCAGCAGCAAGCCGGCCAGGGGGACGCCATTGATCGCTGCCAGGCTGACAGCGAGGATGATGTCGTCGCGGTCGCCCGGGGTTACCACCAGGGTGCCCGAGGTCAGTAGCGGGACCGT  >  NC_002947/892686‑892970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.