New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1811653	45 (1.520)	4 (0.140)	4/236	NT	7.7%	coding (807/897 nt)	PP_1615	LysR family transcriptional regulator
	?	NC_002947	= 1811699	53 (1.870)					coding (761/897 nt)	PP_1615	LysR family transcriptional regulator

CAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGC  >  NC_002947/1811505‑1811801                                                                                                                                                     |                                                                                                                                                      caGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCTGGCGACCACGCCAACTCCGCCTACGGAGAATCCAGCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCg                                                                                                                                                      <  1:216588/150‑1 (MQ=255)       gtcgtAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACa                                                                                                                                                >  2:226563/1‑150 (MQ=255)                 cGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCtggaggcgcaccaaccg                                                                                                                                      >  2:249840‑M1/1‑133 (MQ=255)                    gTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATAccgc                                                                                                                                   >  1:127439/1‑150 (MQ=255)                    gTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATAccgc                                                                                                                                   >  1:309032/1‑150 (MQ=255)                    gTTTACCCGCGAAGAGGCCAGTACAAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATAccgc                                                                                                                                   >  1:771253/1‑150 (MQ=255)                     tttACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATAccgcc                                                                                                                                  <  2:66051/150‑1 (MQ=255)                               aaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGTTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑cggcg                                                                                                                       <  1:382268/150‑1 (MQ=255)                                     ccAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGt                                                                                                                 <  1:226563/150‑1 (MQ=255)                                      cAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTg                                                                                                                >  2:201138/1‑150 (MQ=255)                                            cagcagCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTc                                                                                                          >  1:730430/1‑150 (MQ=255)                                                   acaTCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAgcagc                                                                                                   >  1:108370‑M2/1‑145 (MQ=255)                                                      tCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCtggaggcgcaccaaccgccgaatacggcggtatgggcgctgtatccgcagcaga                                                                                                 <  1:249840‑M1/150‑55 (MQ=255)                                                          gTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCa                                                                                            <  2:730430/150‑1 (MQ=255)                                                                cGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGcac                                                                                      >  1:130449/1‑150 (MQ=255)                                                                    aCGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATACACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGcaccaca                                                                                  <  2:545205/150‑2 (MQ=255)                                                                       aTACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGtt                                                                               <  2:277325/150‑1 (MQ=255)                                                                         aCTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGTGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                             <  2:413055/150‑1 (MQ=255)                                                                         aCTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                             <  2:21649/150‑1 (MQ=255)                                                                          cTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                            <  2:309032/150‑1 (MQ=255)                                                                           tCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAgg                                                                           >  2:501134/1‑150 (MQ=255)                                                                            ccGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGgt                                                                          <  1:501134/150‑1 (MQ=255)                                                                             cGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGAGACAGCGCCCATACCGCCGTCTTCCTGCATGCGCTG‑GGCTCTATCAGCGACACCAGCGCACCACTGTTCAGgtg                                                                         >  1:776006/1‑150 (MQ=255)                                                                                    cccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCtggaggcgcaccaaccgccgaatacggcggtatgggcgctgtatccgcag                                                                                                     >  2:52215‑M1/1‑66 (MQ=255)                                                                                    cccGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCtggaggcgcaccaaccgccgaatacggcggtatgggcgctgtatccgcag                                                                                                     <  1:52215‑M1/116‑51 (MQ=255)                                                                                      cGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                            <  1:255776/138‑1 (MQ=255)                                                                                      cGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                            >  2:255776/1‑138 (MQ=255)                                                                                       gCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACg                                                               <  2:251182/150‑1 (MQ=255)                                                                                         cAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACgta                                                             >  1:777178/1‑150 (MQ=255)                                                                                          aaCCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACgtag                                                            <  1:142543/150‑1 (MQ=255)                                                                                             cccTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTaa                                                         <  2:771253/150‑1 (MQ=255)                                                                                              cctcctTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAAt                                                        >  2:788486/1‑150 (MQ=255)                                                                                               ctcctTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATc                                                       >  1:278050/1‑150 (MQ=255)                                                                                               ctcctTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATc                                                       <  1:386065/150‑1 (MQ=255)                                                                                                   ttCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTcc                                                                     <  1:547033/132‑1 (MQ=255)                                                                                                   ttCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTcc                                                                     >  2:547033/1‑132 (MQ=255)                                                                                                   ttCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGc                                                   >  2:96216/1‑150 (MQ=255)                                                                                                      aGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAAc                                                >  1:655807/1‑150 (MQ=255)                                                                                                       ggTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACt                                               >  1:290768/1‑150 (MQ=255)                                                                                                        gTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                             >  2:532047/1‑119 (MQ=255)                                                                                                        gTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                             <  1:532047/119‑1 (MQ=255)                                                                                                               accaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                             >  1:630799/1‑112 (MQ=255)                                                                                                               accaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                             <  2:630799/112‑1 (MQ=255)                                                                                                                ccaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAAcc                                      <  2:604262/150‑1 (MQ=255)                                                                                                                   gccgccGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGa                                   >  2:256376/1‑150 (MQ=255)                                                                                                                    ccgccgTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGAt                                  <  2:655807/150‑1 (MQ=255)                                                                                                                     cgccgTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGAtt                                 <  1:201138/150‑1 (MQ=255)                                                                                                                            ccTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCACCACCAGCGTAACAATGTTCATGTATTGTAGTACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCa                          <  1:413984/150‑1 (MQ=255)                                                                                                                                 ggcggctggTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGcgcc                     <  1:350431/143‑1 (MQ=255)                                                                                                                                  gCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACAAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCACCTGGCACAACCCGATTCCTTGCAGcgccc                    >  2:75915/1‑149 (MQ=255)                                                                                                                                              tctGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAgcagcagaggcacctgtcgccgaaggtacggcggctggtggattacctgaaggaggggttggcggggttgccggagtatcgtttcggctgacggga        <  1:249840‑M2/150‑97 (MQ=255)                                                                                                                                              tctGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTg        >  1:689560/1‑150 (MQ=255)                                                                                                                                                 gctgctggaggcgcaccaaccgccgaatacggcggtatgggcgctgtatccgcagcagaggcacctgtcgccgaaggtacggcggctggtggattacctgaaggaggggttggcggggttgccggagtatcgtttcggctgacgggatgt      >  1:108370‑M1/1‑5 (MQ=255)                                                                                                                                                  gtgcGGATACGGCGCCCATACCGCAGTCTT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGACACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTg    <  2:130449/149‑1 (MQ=255)                                                                                                                                                  ctgcGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAgcagcagaggcacctgtcgccgaaggtacggcggctggtggattacctgaaggaggggttggcggg                                      <  1:52215‑M2/116‑67 (MQ=255)                                                                                                                                                  ctgcGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAgcagcagaggcacctgtcgccgaaggtacggcggctggtggattacctgaaggaggggttggcggg                                      >  2:52215‑M2/1‑50 (MQ=255)                                                                                                                                                   tgcGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTgg   >  1:249077/1‑150 (MQ=255)                                                                                                                                                    gcGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGc  <  2:777178/150‑1 (MQ=255)                                                                                                                                                     cGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGc                                                   >  2:358616/1‑100 (MQ=255)                                                                                                                                                     cGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGc                                                   <  1:358616/100‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGC  >  NC_002947/1811505‑1811801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.