New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1811653	45 (1.520)	4 (0.140)	4/236	NT	7.7%	coding (807/897 nt)	PP_1615	LysR family transcriptional regulator
	?	NC_002947	= 1811699	53 (1.870)					coding (761/897 nt)	PP_1615	LysR family transcriptional regulator

ACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCTGTACCCGCTGGCTGA  >  NC_002947/1811555‑1811840                                                                                                                                                  |                                                                                                                                              acaTCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAgcagc                                                                                                                                          >  1:108370‑M2/1‑145 (MQ=255)        gTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCa                                                                                                                                   <  2:730430/150‑1 (MQ=255)              cGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGcac                                                                                                                             >  1:130449/1‑150 (MQ=255)                  aCGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATACACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGcaccaca                                                                                                                         <  2:545205/150‑2 (MQ=255)                     aTACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGtt                                                                                                                      <  2:277325/150‑1 (MQ=255)                       aCTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGTGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                                                                    <  2:413055/150‑1 (MQ=255)                       aCTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                                                                    <  2:21649/150‑1 (MQ=255)                        cTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                                                                   <  2:309032/150‑1 (MQ=255)                         tCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAgg                                                                                                                  >  2:501134/1‑150 (MQ=255)                          ccGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGgt                                                                                                                 <  1:501134/150‑1 (MQ=255)                           cGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGAGACAGCGCCCATACCGCCGTCTTCCTGCATGCGCTG‑GGCTCTATCAGCGACACCAGCGCACCACTGTTCAGgtg                                                                                                                >  1:776006/1‑150 (MQ=255)                                    cGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                                                                   >  2:255776/1‑138 (MQ=255)                                    cGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAg                                                                                                                   <  1:255776/138‑1 (MQ=255)                                     gCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACg                                                                                                      <  2:251182/150‑1 (MQ=255)                                       cAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACgta                                                                                                    >  1:777178/1‑150 (MQ=255)                                        aaCCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACgtag                                                                                                   <  1:142543/150‑1 (MQ=255)                                           cccTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTaa                                                                                                <  2:771253/150‑1 (MQ=255)                                            cctcctTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAAt                                                                                               >  2:788486/1‑150 (MQ=255)                                             ctcctTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATc                                                                                              >  1:278050/1‑150 (MQ=255)                                             ctcctTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATc                                                                                              <  1:386065/150‑1 (MQ=255)                                                 ttCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTcc                                                                                                            >  2:547033/1‑132 (MQ=255)                                                 ttCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTcc                                                                                                            <  1:547033/132‑1 (MQ=255)                                                 ttCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGc                                                                                          >  2:96216/1‑150 (MQ=255)                                                    aGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAAc                                                                                       >  1:655807/1‑150 (MQ=255)                                                     ggTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACt                                                                                      >  1:290768/1‑150 (MQ=255)                                                      gTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                                                                    >  2:532047/1‑119 (MQ=255)                                                      gTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                                                                    <  1:532047/119‑1 (MQ=255)                                                             accaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                                                                    >  1:630799/1‑112 (MQ=255)                                                             accaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCa                                                                                                                    <  2:630799/112‑1 (MQ=255)                                                              ccaGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAAcc                                                                             <  2:604262/150‑1 (MQ=255)                                                                 gccgccGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGa                                                                          >  2:256376/1‑150 (MQ=255)                                                                  ccgccgTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGAt                                                                         <  2:655807/150‑1 (MQ=255)                                                                   cgccgTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGAtt                                                                        <  1:201138/150‑1 (MQ=255)                                                                          ccTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCACCACCAGCGTAACAATGTTCATGTATTGTAGTACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCa                                                                 <  1:413984/150‑1 (MQ=255)                                                                               ggcggctggTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGcgcc                                                            <  1:350431/143‑1 (MQ=255)                                                                                gCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACAAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCACCTGGCACAACCCGATTCCTTGCAGcgccc                                                           >  2:75915/1‑149 (MQ=255)                                                                                            tctGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAgcagcagaggcacctgtcgccgaaggtacggcggctggtggattacctgaaggaggggttggcggggttgccggagtatcgtttcggctgacggga                                               <  1:249840‑M2/150‑97 (MQ=255)                                                                                            tctGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTg                                               >  1:689560/1‑150 (MQ=255)                                                                                                gtgcGGATACGGCGCCCATACCGCAGTCTT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGACACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTg                                           <  2:130449/149‑1 (MQ=255)                                                                                                ctgcGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAgcagcagaggcacctgtcgccgaaggtacggcggctggtggattacctgaaggaggggttggcggg                                                                             >  2:52215‑M2/1‑50 (MQ=255)                                                                                                ctgcGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAgcagcagaggcacctgtcgccgaaggtacggcggctggtggattacctgaaggaggggttggcggg                                                                             <  1:52215‑M2/116‑67 (MQ=255)                                                                                                 tgcGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTgg                                          >  1:249077/1‑150 (MQ=255)                                                                                                  gcGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGc                                         <  2:777178/150‑1 (MQ=255)                                                                                                   cGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGc                                                                                          >  2:358616/1‑100 (MQ=255)                                                                                                   cGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGc                                                                                          <  1:358616/100‑1 (MQ=255)                                                                                                       tACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTg                                    <  1:256376/150‑1 (MQ=255)                                                                                                          aGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTg                                 >  2:599337/1‑150 (MQ=255)                                                                                                               ccATCCCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCC‑TGCAGCGCCGCATCCAGCACTGCCTgg                                          <  2:581940/135‑1 (MQ=255)                                                                                                               ccATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCa                               >  2:114448/1‑147 (MQ=255)                                                                                                               ccATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCa                               <  1:114448/147‑1 (MQ=255)                                                                                                               ccATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCC‑TGCAGCGCCGCATCCAGCACTGCCTgg                                          >  1:581940/1‑135 (MQ=255)                                                                                                                 aTACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGcc                          <  2:249077/150‑1 (MQ=255)                                                                                                                     cgccgTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGtt                      >  1:538287/1‑150 (MQ=255)                                                                                                                          tATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCt                 <  1:599337/150‑1 (MQ=255)                                                                                                                                  cggTTGGTGCGCCTCCAgcagcagaggcacctgtcgccgaaggtacggcggctggtggattacctgaaggaggggttggcggggttgccggagtatcgtttcggctgacgggatgtgctgctggtactggcctcttcgcgggtaaacccg          >  2:249840‑M2/1‑17 (MQ=255)                                                                                                                                        gTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGTCCACTGTTGCAGCGCCAGTTACCCTGTACCCgctggct    >  1:329739/1‑150 (MQ=255)                                                                                                                                          gcgcCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCTGTACCCGCTGGCTGa  <  1:788486/150‑1 (MQ=255)                                                                                                                                          gcgcCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCTGTACCCGCTGGCTGa  <  2:776006/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              ACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT‑CGGCGGTTGGTGCGCCTCCAGCAGCGACACCAGCGCACCACTGTTCAGGTGTTCCAGCACGTAGTAATCCGGCAACTGGCACAACCCGATTCCTTGCAGCGCCGCATCCAGCACTGCCTGGCCACTGTTGCAGCGCCAGTTACCCTGTACCCGCTGGCTGA  >  NC_002947/1811555‑1811840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.