| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_002947 | 1,842,677 | Δ53 bp | 100% | coding (2107‑2159/2754 nt) | gacS ← | sensor protein GacS |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1842677 | 1842729 | 53 | 28 [0] | [0] 31 | gacS | sensor protein GacS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1842676 | 0 (0.000) | 25 (0.850) | 21/244 | NT | 100% | coding (2160/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 1842730 = | 0 (0.000) | coding (2106/2754 nt) | gacS | sensor protein GacS | |||||
AGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGC > NC_002947/1842528‑1842807 | aGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTAAAGGCGCGGCCGTCCATGCCGGGCATCc < 1:312036‑M1/150‑2 (MQ=255) tgCAACAACGCGCGTTTTTCGTTGGCCATGGTATGGATCCTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgac < 1:209701‑M1/150‑19 (MQ=255) gcgcgTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtac > 1:230252‑M1/1‑123 (MQ=255) gcgcgTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtac > 1:720362‑M1/1‑123 (MQ=255) cGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcaccc < 2:188066‑M1/150‑38 (MQ=255) catggcatggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtctt > 2:295109‑M1/1‑106 (MQ=255) atggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagca < 2:115863‑M1/150‑51 (MQ=255) tggGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcag < 1:102024‑M1/150‑52 (MQ=255) ggCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttacca < 2:515248‑M1/150‑63 (MQ=255) gCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccag < 2:230252‑M1/150‑64 (MQ=255) gCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttg > 1:394239‑M1/1‑77 (MQ=255) gtgtTCTCCCACAGGAGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg > 2:157033‑M1/1‑57 (MQ=255) gtgtTCTCCCACAGGAGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg > 2:156816‑M1/1‑57 (MQ=255) gtgtTCTCCCACAGGAGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg < 1:157033‑M1/109‑53 (MQ=255) gtgtTCTCCCACAGGAGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagg < 1:156816‑M1/109‑53 (MQ=255) ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcga < 1:667944‑M1/96‑48 (MQ=255) ccACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcga > 2:667944‑M1/1‑49 (MQ=255) tGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctg > 2:449413‑M1/1‑36 (MQ=255) gTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgccgctggccgag > 2:458895‑M1/1‑30 (MQ=255) gTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgt > 2:247723‑M1/1‑30 (MQ=255) gTACAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgt < 1:247723‑M1/116‑87 (MQ=255) cAGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggg < 1:449413‑M1/150‑124 (MQ=255) aGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacg > 2:103272‑M1/1‑26 (MQ=255) aGGCGCGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacg < 1:103272‑M1/117‑92 (MQ=255) gcgcGGCCGTCCATGCCGGGCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggtt > 1:491126‑M1/1‑24 (MQ=255) gCCGTCCATGCCGGGCATCcgcataaccattgttgccggacagtaccccggcactcaggtcttcgaggagggtcttttccagcagcaggttggcggcattgtcgtcgacgcagagtattttcggtcgtcgctggccgttggggttgctcc < 2:487819‑M1/150‑132 (MQ=255) gCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtc < 2:438844‑M1/89‑85 (MQ=255) gCATCcgcataaccattgttgacggccagtacctcggcacccaggtcttcgagcagggtttttaccagcagcaggttggcggcattgtc > 1:438844‑M1/1‑5 (MQ=255) | AGTCGTCCATGCCGCTGTGCAACAACGCGCGTTTTTCGTTGGCCATGGCATGGGCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGC > NC_002947/1842528‑1842807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |