| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_002947 | 1,842,677 | Δ53 bp | 100% | coding (2107‑2159/2754 nt) | gacS ← | sensor protein GacS |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1842677 | 1842729 | 53 | 28 [0] | [0] 31 | gacS | sensor protein GacS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1842676 | 0 (0.000) | 25 (0.850) | 21/244 | NT | 100% | coding (2160/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 1842730 = | 0 (0.000) | coding (2106/2754 nt) | gacS | sensor protein GacS | |||||
GCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTCGGCCAGCGGACGGCG > NC_002947/1842581‑1842879 | agtcgtccatgccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtaaaggcgcggccgtccatgccgggcatcc < 1:312036‑M2/1‑1 (MQ=255) tgcaacaacgcgcgtttttcgttggccatggtatggatcctgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGAc < 1:209701‑M2/18‑1 (MQ=255) gcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTAc > 1:230252‑M2/124‑150 (MQ=255) gcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTAc > 1:720362‑M2/124‑150 (MQ=255) cgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCAccc < 2:188066‑M2/37‑1 (MQ=255) catggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCtt > 2:295109‑M2/107‑150 (MQ=255) atgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCa < 2:115863‑M2/50‑1 (MQ=255) tgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAg < 1:102024‑M2/51‑1 (MQ=255) ggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACca < 2:515248‑M2/62‑1 (MQ=255) gcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACcag < 2:230252‑M2/63‑1 (MQ=255) gcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTg > 1:394239‑M2/78‑150 (MQ=255) gtgttctcccacaggaggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAgg > 2:156816‑M2/58‑109 (MQ=255) gtgttctcccacaggaggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAgg > 2:157033‑M2/58‑109 (MQ=255) gtgttctcccacaggaggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAgg < 1:157033‑M2/52‑1 (MQ=255) gtgttctcccacaggaggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAgg < 1:156816‑M2/52‑1 (MQ=255) ccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGa < 1:667944‑M2/47‑1 (MQ=255) ccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGa > 2:667944‑M2/50‑96 (MQ=255) tgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTg > 2:449413‑M2/37‑150 (MQ=255) gtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTgtcgt > 2:247723‑M2/31‑116 (MQ=255) gtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTgtcgt < 1:247723‑M2/86‑1 (MQ=255) gtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGCCGCTGGccgag > 2:458895‑M2/31‑148 (MQ=255) caggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTggg < 1:449413‑M2/123‑1 (MQ=255) aggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACg < 1:103272‑M2/91‑1 (MQ=255) aggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACg > 2:103272‑M2/27‑117 (MQ=255) gcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGtt > 1:491126‑M2/25‑150 (MQ=255) gccgtccatgccgggcatcCGCATAACCATTGTTGCCGGACAGTACCCCGGCACTCAGGTCTTCGAGGAGGGTCTTTTCCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTcc < 2:487819‑M2/131‑1 (MQ=255) gcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTgtc < 2:438844‑M2/84‑1 (MQ=255) gcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTgtc > 1:438844‑M2/6‑89 (MQ=255) cgcATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTc < 1:66935/103‑1 (MQ=255) cgcATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTc > 2:66935/1‑103 (MQ=255) cgcATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTCGGCCAGCGGACGGCg > 1:414101/1‑150 (MQ=255) | GCAGTGAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTCGGCCAGCGGACGGCG > NC_002947/1842581‑1842879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |