| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2063227 | 27 (0.910) | 7 (0.300) | 6/196 | NT | 23.9% | intergenic (+41/‑166) | PP_1838/PP_1839 | membrane protein/hypothetical protein |
| ? | NC_002947 | = 2063271 | 23 (0.980) | intergenic (+85/‑122) | PP_1838/PP_1839 | membrane protein/hypothetical protein | |||||
CCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGA > NC_002947/2063082‑2063375 | ccGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcac > 2:63096‑M1/1‑146 (MQ=255) cAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacc > 1:666008‑M1/1‑140 (MQ=255) cGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGcc < 2:115343/150‑2 (MQ=255) gAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGcaca < 2:153094/150‑1 (MQ=255) aaTGATCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCGGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAgg < 1:106696/150‑1 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa > 2:158818/1‑150 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa > 1:103707/1‑150 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAAAACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa > 2:127513/1‑150 (MQ=255) tGGAAGCGTATATCCAGACCGCGACCAAAAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtg > 2:690350‑M1/1‑118 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg > 1:83893/1‑150 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 2:589806/150‑1 (MQ=255) aGCGTATACCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAgg < 2:58309/150‑1 (MQ=255) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcc < 1:63096‑M1/150‑40 (MQ=255) cAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtggga < 2:666008‑M1/150‑47 (MQ=255) aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGGGCAGGTTCTGCGCgac < 1:720437‑M2/150‑4 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCCCGG‑ATATCGCTATTATTCCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgg < 2:419380‑M1/150‑51 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgg < 1:690350‑M1/150‑51 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGgagcgg > 1:158930‑M2/1‑144 (MQ=255) cgcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcggg < 1:117906‑M1/150‑52 (MQ=255) gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa > 2:272355‑M2/1‑140 (MQ=255) agCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGTAGGTTCTGTGCgagcgggcaagcccgcg < 1:202317‑M2/150‑18 (MQ=255) aaTAACACGGCCGGCGTGGTGCACGGCACACCT‑TAGTAAAGCGGGGCCGCGTTCGGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGccc < 1:684834/149‑1 (MQ=37) cacCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa > 1:669589‑M2/1‑119 (MQ=255) cacCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa < 2:669589‑M2/129‑11 (MQ=255) tgCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACt < 1:158818/150‑1 (MQ=255) gCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAg < 1:671332/77‑1 (MQ=255) gCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAg > 2:671332/1‑77 (MQ=255) gCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTg > 2:56253/1‑150 (MQ=255) gCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCAGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCTCGCGGGCAAGCCAGCGAATTGGCCCCGCACAATTTTCCAGGAcag > 2:301112/1‑148 (MQ=38) gCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGTTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACAt < 1:127513/150‑1 (MQ=255) acCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGGTCCCACAGGCGTTGCACAGGGTTCGGACCTTGAGCAGGACCTGTGCGAGCGGGCAAGCCAACGAAGGGGCCCCGTACAATTTTCGCCGATTGAACATTATc > 2:338823/1‑150 (MQ=37) acCG‑AAGTAAACCGGGGCCGCGTTGCGGCACATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCAAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATc < 1:338823/150‑1 (MQ=255) aaGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgc < 1:470656‑M2/107‑17 (MQ=255) aaGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgc > 2:470656‑M2/1‑91 (MQ=255) tAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGccc > 2:357095/1‑150 (MQ=255) ccGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAg > 1:604680/1‑150 (MQ=255) ccGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAg < 2:604680/150‑1 (MQ=255) ggCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGCCCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCa < 2:103707/150‑1 (MQ=255) ccGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGt > 1:625251/1‑150 (MQ=255) gTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTAtt < 2:83893/150‑1 (MQ=255) cagtggggggCGTGCCCGCTCCCACAGTAATCGCAAAGGTTTCGGGCCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATca < 2:720437/143‑1 (MQ=255) cgcgGGCTTGCCCGCTCgcacagaacctacacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggct < 1:202317‑M1/150‑134 (MQ=255) gcgGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttactt < 1:470656‑M1/107‑92 (MQ=255) gcgGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttactt > 2:470656‑M1/1‑16 (MQ=255) ttGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtc > 2:272355‑M1/1‑10 (MQ=255) ttGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtg > 1:669589‑M1/1‑10 (MQ=255) ttGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtg < 2:669589‑M1/129‑120 (MQ=255) ttGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGCGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTgggg > 2:451580/1‑148 (MQ=255) gCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGtt < 1:357095/150‑1 (MQ=255) cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcg < 1:117906‑M2/150‑100 (MQ=255) ccGCTCccacaggcattgcacagggttcggaccttgtgcaggtcctgtgcgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcgg > 1:158930‑M1/1‑6 (MQ=255) ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcgg < 1:690350‑M2/150‑101 (MQ=255) ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggaataatagcgatatccgggcaccacgccggcggtgttatccagcaggctcttggtcgcgg < 2:419380‑M2/150‑101 (MQ=255) gtcgcgcagaacctgcccaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcggtct < 1:720437‑M1/149‑148 (MQ=255) tCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcggtctg < 2:666008‑M2/150‑105 (MQ=255) ccccACAGCCCTTGCATGGTGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCACCGAGGTGGCGCCGCACACATTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATAACACACCTGGTGTTCGTTGa < 1:56253/149‑1 (MQ=255) | CCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCG‑AAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGA > NC_002947/2063082‑2063375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |