New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2063227	27 (0.910)	7 (0.300)	6/196	NT	23.9%	intergenic (+41/‑166)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	= 2063271	23 (0.980)					intergenic (+85/‑122)	PP_1838/PP_1839	membrane protein/hypothetical protein

AGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTG  >  NC_002947/2063125‑2063417                                                                                                                                                   |                                                                                                                                                   aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGGGCAGGTTCTGCGCgac                                                                                                                                                 <  1:720437‑M2/150‑4 (MQ=255)    ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGgagcgg                                                                                                                                              >  1:158930‑M2/1‑144 (MQ=255)        gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa                                                                                                                                          >  2:272355‑M2/1‑140 (MQ=255)               agCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGTAGGTTCTGTGCgagcgggcaagcccgcg                                                                                                                                   <  1:202317‑M2/150‑18 (MQ=255)                        aaTAACACGGCCGGCGTGGTGCACGGCACACCTTAGTAAAGCGGGGCCGCGTTCGGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGccc                                                                                                                          <  1:684834/149‑1 (MQ=37)                             cacCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa                                                                                                                                          <  2:669589‑M2/129‑11 (MQ=255)                             cacCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa                                                                                                                                          >  1:669589‑M2/1‑119 (MQ=255)                                           tgCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACt                                                                                                       <  1:158818/150‑1 (MQ=255)                                            gCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTg                                                                                                      >  2:56253/1‑150 (MQ=255)                                            gCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCAGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCTCGCGGGCAAGCCAGCGAATTGGCCCCGCACAATTTTCCAGGAcag                                                                                                      >  2:301112/1‑148 (MQ=38)                                                 gCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGTTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACAt                                                                                                 <  1:127513/150‑1 (MQ=255)                                                     acCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGGTCCCACAGGCGTTGCACAGGGTTCGGACCTTGAGCAGGACCTGTGCGAGCGGGCAAGCCAACGAAGGGGCCCCGTACAATTTTCGCCGATTGAACATTATc                                                                                             >  2:338823/1‑150 (MQ=37)                                                     acCGAAGTAAACCGGGGCCGCGTTGCGGCACATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCAAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATc                                                                                             <  1:338823/150‑1 (MQ=255)                                                         aaGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgc                                                                                                                                    >  2:470656‑M2/1‑91 (MQ=255)                                                         aaGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgc                                                                                                                                    <  1:470656‑M2/107‑17 (MQ=255)                                                            tAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGccc                                                                                      >  2:357095/1‑150 (MQ=255)                                                                ccGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAg                                                                                  >  1:604680/1‑150 (MQ=255)                                                                ccGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAg                                                                                  <  2:604680/150‑1 (MQ=255)                                                                    ggCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGCCCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCa                                                                              <  2:103707/150‑1 (MQ=255)                                                                      ccGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGt                                                                            >  1:625251/1‑150 (MQ=255)                                                                          gTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTAtt                                                                        <  2:83893/150‑1 (MQ=255)                                                                                   cagtggggggCGTGCCCGCTCCCACAGTAATCGCAAAGGTTTCGGGCCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATca                                                               <  2:720437/143‑1 (MQ=255)                                                                                              ttGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGCGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTgggg                                                    >  2:451580/1‑148 (MQ=255)                                                                                                gCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGtt                                                  <  1:357095/150‑1 (MQ=255)                                                                                                 cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcg                                                 <  1:117906‑M2/150‑100 (MQ=255)                                                                                                  ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcgg                                                <  1:690350‑M2/150‑101 (MQ=255)                                                                                                  ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggaataatagcgatatccgggcaccacgccggcggtgttatccagcaggctcttggtcgcgg                                                <  2:419380‑M2/150‑101 (MQ=255)                                                                                                      tCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcggtctg                                            <  2:666008‑M2/150‑105 (MQ=255)                                                                                                      ccccACAGCCCTTGCATGGTGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCACCGAGGTGGCGCCGCACACATTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATAACACACCTGGTGTTCGTTGa                                            <  1:56253/149‑1 (MQ=255)                                                                                                        ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt                                          >  1:629416/1‑150 (MQ=255)                                                                                                             ggCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcggtctggatatac                                     <  1:63096‑M2/150‑112 (MQ=255)                                                                                                              gCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAgg                                    >  1:370466/1‑150 (MQ=255)                                                                                                                    cacaGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggcttttggtcgcggtctggatatacgcttcca                              >  2:690350‑M2/1‑32 (MQ=255)                                                                                                                     acaGGGTTCGGACCTTGTGCAGGTCCTGGGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGtt                             <  2:137690/150‑1 (MQ=255)                                                                                                                        gggTTCGGACCTTGTCCAGGTCCTGTGCAAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCaa                          <  1:301112/150‑1 (MQ=255)                                                                                                                               gACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAaga                   >  2:507011/1‑150 (MQ=255)                                                                                                                               gACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCAGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAaga                   >  1:497312/1‑150 (MQ=255)                                                                                                                                      tgCAGGTCCTGTCCGAGGGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGaa            <  2:202317/150‑1 (MQ=255)                                                                                                                                          ggTCCTGTGCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcggtctggatatacgcttccagcttcttgagcatttccggctg        >  1:666008‑M2/1‑10 (MQ=255)                                                                                                                                                gtgCgagcgggcaagcccgcgaatgggccgcaacgcggccccggtttacttcggtgtgccgtgcaccacgccggcggtgttatccagcaggctcttggtcgcggtctggatatacgcttccagcttcttgagcatttccggctggtccgg  >  2:63096‑M2/1‑4 (MQ=255)                                                                                                                                                gtgCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTg  >  2:640397/1‑150 (MQ=255)                                                                                                                                                 tgCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATccc                                                                                           >  2:146222/1‑60 (MQ=255)                                                                                                                                                 tgCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATccc                                                                                           <  1:146222/60‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   AGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTG  >  NC_002947/2063125‑2063417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.