New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2303562	32 (1.080)	3 (0.110)	3/230	NT	7.5%	coding (1323/1632 nt)	PP_2027	hypothetical protein
	?	NC_002947	= 2303589	44 (1.590)					coding (1296/1632 nt)	PP_2027	hypothetical protein

GACAACGGCACGAAGCGCGCCGCCATCTCGGCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCG  >  NC_002947/2303413‑2303709                                                                                                                                                      |                                                                                                                                                    gACAACGGCACGAAGCGCGCCGCCATCTCGGCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTC                                                                                                                                                     <  1:328008‑M1/150‑1 (MQ=255)            gAAGCGCGCCGCCATCTCGGCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTgcg                                                                                                                                          >  2:377787/1‑150 (MQ=255)                            tcGGCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTgcg                                                                                                                                                 <  2:99657/127‑1 (MQ=255)                            tcGGCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTgcg                                                                                                                                                 >  1:99657/1‑127 (MQ=255)                               gCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaa                                                                                                                       <  1:291628‑M2/150‑4 (MQ=255)                                   gggTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCgcggccagcggtgctgcgcacggcgcagaacggg                                                                                                                   <  2:375609‑M1/150‑35 (MQ=255)                                    ggTTTCCGGTTGCTGCCGGGCCAAGGAATCCCGAGCCTGGCGGGTAGCAGTGCAGGCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaacgggc                                                                                                                  <  1:99941‑M2/150‑9 (MQ=255)                                      tttCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGgcgc                                                                                                                >  2:669053/1‑150 (MQ=255)                                      tttCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGgcgc                                                                                                                >  2:23640/1‑150 (MQ=255)                                                 tgcCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAgg                                                                                                     >  1:469293/1‑150 (MQ=255)                                                        cccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGc                                                                                              >  1:599740/1‑150 (MQ=255)                                                         ccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGcc                                                                                             >  1:39093/1‑150 (MQ=255)                                                            ggCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAg                                                                                          <  2:270901/150‑1 (MQ=255)                                                               aTCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCAc                                                                                       >  2:75681/1‑150 (MQ=255)                                                                  cAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACggt                                                                                    >  2:286614/1‑150 (MQ=255)                                                                   aGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACggtg                                                                                   <  1:483604/150‑1 (MQ=255)                                                                                 aGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAacac                                                                     <  1:669053/150‑1 (MQ=255)                                                                                   ccTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCa                                                                   <  2:599740/150‑1 (MQ=255)                                                                                   ccTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCa                                                                   <  2:99941/150‑1 (MQ=255)                                                                                     tGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGACCGCGCTGGCATCCAGAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAgt                                                                 <  1:737147/150‑1 (MQ=255)                                                                                          gTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGTGGGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGa                                                            <  1:45181/150‑1 (MQ=255)                                                                                                   cTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCa                                                   <  1:701051/150‑1 (MQ=255)                                                                                                    tGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAg                                                  >  2:620610/1‑150 (MQ=255)                                                                                                       cATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGc                                               <  1:75681/150‑1 (MQ=255)                                                                                                        aTGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAgt                                                                 <  1:787623/131‑1 (MQ=255)                                                                                                        aTGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAgt                                                                 >  2:787623/1‑131 (MQ=255)                                                                                                              gcTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCAcagca                                        <  2:299738/150‑1 (MQ=255)                                                                                                                    ggTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCgcggccagcggtgctgcgcacggcgcagaacgggc                                                                                                                  >  1:666149‑M1/1‑35 (MQ=255)                                                                                                                    ggTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCgcggccagcggtgctgcgcacggcgcagaacgggc                                                                                                                  <  2:666149‑M1/70‑36 (MQ=255)                                                                                                                     gtcgtcCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCt                                 >  2:440856/1‑150 (MQ=255)                                                                                                                       cgtcCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTgg                               <  2:85092/150‑1 (MQ=255)                                                                                                                        gtcCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGgc                              >  2:440939/1‑150 (MQ=255)                                                                                                                                 ggTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCtgtt                     >  1:156281/1‑150 (MQ=255)                                                                                                                                       tGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAggg                                                >  1:721783/1‑117 (MQ=255)                                                                                                                                       tGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAggg                                                <  2:721783/117‑1 (MQ=255)                                                                                                                                              ggCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCggg        <  1:23640/150‑1 (MQ=255)                                                                                                                                               gCCCGTTCgcggccagcggtgctgcgcacggcgcagaacgggccaagcccacgcaccttgctggacgacctcaagcgcgcatgccaggccaacgcctgcactgctacccgccaggctcgggattccttggcccggcagcaaccggaaacc       <  1:99941‑M1/150‑143 (MQ=255)                                                                                                                                               gCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaacgggccaagcccacgcaccttgctggacgacc                                                                                       >  1:666149‑M2/1‑35 (MQ=255)                                                                                                                                               gCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaacgggccaagcccacgcaccttgctggacgacc                                                                                       <  2:666149‑M2/70‑36 (MQ=255)                                                                                                                                                cccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaacgggccaagcccacgcaccttgctggacgacctcaagcgcgcatgccaggccaacgacccccaggctacgcgccaggcgctggatgcctgggcccggcagcaaccggaaaccc      <  2:375609‑M2/150‑117 (MQ=255)                                                                                                                                                cccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGc                                               <  1:773805/109‑1 (MQ=255)                                                                                                                                                cccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGc                                               >  2:773805/1‑109 (MQ=255)                                                                                                                                                 ccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGTCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAgg                                                 <  1:97841/106‑1 (MQ=255)                                                                                                                                                 ccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGTCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAgg                                                 >  2:97841/1‑106 (MQ=255)                                                                                                                                                    ttCgcggccagcggtgctgcgcacggcgcagaacgggccaagcccacgcaccttgctggacgacctcaagcgcgcatgccaggccaacgacccccaggctacgcgccaggcgctggatgcctgggcccggcagcaaccggaaaccctggc  <  1:291628‑M1/150‑148 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GACAACGGCACGAAGCGCGCCGCCATCTCGGCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCG  >  NC_002947/2303413‑2303709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.