New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2303562	32 (1.080)	3 (0.110)	3/230	NT	7.5%	coding (1323/1632 nt)	PP_2027	hypothetical protein
	?	NC_002947	= 2303589	44 (1.590)					coding (1296/1632 nt)	PP_2027	hypothetical protein

GCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAG  >  NC_002947/2303443‑2303732                                                                                                                                                   |                                                                                                                                                gCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaa                                                                                                                                              <  1:291628‑M2/150‑4 (MQ=255)      ggTTTCCGGTTGCTGCCGGGCCAAGGAATCCCGAGCCTGGCGGGTAGCAGTGCAGGCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaacgggc                                                                                                                                         <  1:99941‑M2/150‑9 (MQ=255)        tttCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGgcgc                                                                                                                                       >  2:23640/1‑150 (MQ=255)        tttCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGgcgc                                                                                                                                       >  2:669053/1‑150 (MQ=255)                   tgcCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAgg                                                                                                                            >  1:469293/1‑150 (MQ=255)                          cccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGc                                                                                                                     >  1:599740/1‑150 (MQ=255)                           ccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGcc                                                                                                                    >  1:39093/1‑150 (MQ=255)                              ggCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAg                                                                                                                 <  2:270901/150‑1 (MQ=255)                                 aTCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCAc                                                                                                              >  2:75681/1‑150 (MQ=255)                                    cAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACggt                                                                                                           >  2:286614/1‑150 (MQ=255)                                     aGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACggtg                                                                                                          <  1:483604/150‑1 (MQ=255)                                                   aGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAacac                                                                                            <  1:669053/150‑1 (MQ=255)                                                     ccTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCa                                                                                          <  2:99941/150‑1 (MQ=255)                                                     ccTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCa                                                                                          <  2:599740/150‑1 (MQ=255)                                                       tGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGACCGCGCTGGCATCCAGAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAgt                                                                                        <  1:737147/150‑1 (MQ=255)                                                            gTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGTGGGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGa                                                                                   <  1:45181/150‑1 (MQ=255)                                                                     cTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCa                                                                          <  1:701051/150‑1 (MQ=255)                                                                      tGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAg                                                                         >  2:620610/1‑150 (MQ=255)                                                                         cATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGc                                                                      <  1:75681/150‑1 (MQ=255)                                                                          aTGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAgt                                                                                        >  2:787623/1‑131 (MQ=255)                                                                          aTGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAgt                                                                                        <  1:787623/131‑1 (MQ=255)                                                                                gcTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCAcagca                                                               <  2:299738/150‑1 (MQ=255)                                                                                       gtcgtcCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCt                                                        >  2:440856/1‑150 (MQ=255)                                                                                         cgtcCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTgg                                                      <  2:85092/150‑1 (MQ=255)                                                                                          gtcCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGgc                                                     >  2:440939/1‑150 (MQ=255)                                                                                                   ggTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCtgtt                                            >  1:156281/1‑150 (MQ=255)                                                                                                         tGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAggg                                                                       >  1:721783/1‑117 (MQ=255)                                                                                                         tGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAggg                                                                       <  2:721783/117‑1 (MQ=255)                                                                                                                ggCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCggg                               <  1:23640/150‑1 (MQ=255)                                                                                                                 gCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaacgggccaagcccacgcaccttgctggacgacc                                                                                                              >  1:666149‑M2/1‑35 (MQ=255)                                                                                                                 gCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaacgggccaagcccacgcaccttgctggacgacc                                                                                                              <  2:666149‑M2/70‑36 (MQ=255)                                                                                                                  cccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCgaacgggccaagcccacgcaccttgctggacgacctcaagcgcgcatgccaggccaacgacccccaggctacgcgccaggcgctggatgcctgggcccggcagcaaccggaaaccc                             <  2:375609‑M2/150‑117 (MQ=255)                                                                                                                  cccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGc                                                                      <  1:773805/109‑1 (MQ=255)                                                                                                                  cccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGc                                                                      >  2:773805/1‑109 (MQ=255)                                                                                                                   ccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGTCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAgg                                                                        <  1:97841/106‑1 (MQ=255)                                                                                                                   ccGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGTCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAgg                                                                        >  2:97841/1‑106 (MQ=255)                                                                                                                         tGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCAcagca                                                               >  2:133440/1‑109 (MQ=255)                                                                                                                         tGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCAcagca                                                               <  1:133440/109‑1 (MQ=255)                                                                                                                         tGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGgcg                      <  1:60668/150‑1 (MQ=255)                                                                                                                            gcCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTc                   <  1:440856/150‑1 (MQ=255)                                                                                                                                    cagtaCCGCTGGCCGCGAACGTGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCgg           <  1:93077/150‑1 (MQ=255)                                                                                                                                     agcaCCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCggg          <  2:469293/150‑1 (MQ=255)                                                                                                                                       caCCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGtt        <  2:156281/150‑1 (MQ=255)                                                                                                                                        aCCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCcaca                                                                  <  1:388189/91‑1 (MQ=255)                                                                                                                                        aCCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCcaca                                                                  >  2:388189/1‑91 (MQ=255)                                                                                                                                          cGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGGTGTTGTCGTCCCCCTGGGGGTCGGCGCGCAGTGCGGGGTTGTc     >  2:209243/1‑150 (MQ=255)                                                                                                                                          cGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTc     >  1:255982/1‑150 (MQ=255)                                                                                                                                          cGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGAACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTCACAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTc     <  1:377787/150‑1 (MQ=255)                                                                                                                                           gCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTcc    >  1:50276/1‑150 (MQ=255)                                                                                                                                           gCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTCGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTcc    <  1:286614/150‑1 (MQ=255)                                                                                                                                             tGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAg  <  2:50276/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                GCCAGGGTTTCCGGTTGCTGCCGGGCCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAG  >  NC_002947/2303443‑2303732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.