| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3002882 | 14 (0.470) | 5 (0.180) | 4/232 | NT | 26.9% | coding (880/1464 nt) | PP_2626 | hypothetical protein |
| ? | NC_002947 | = 3002888 | 14 (0.500) | coding (886/1464 nt) | PP_2626 | hypothetical protein | |||||
GCTACCGGCTACCAGTTACGGCGTTTCGGTTTGTGGGCGCACATTCAGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTG > NC_002947/3002738‑3003029 | gCTACCGGCTACCAGTTACGGCGTTTCGGTTTGTGGGCGCACATTCAGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGCAAGGCGGggtca > 1:916‑M1/1‑145 (MQ=255) tACCGGCTACCAGTTACGGCGTTTCGGTTTGTGGGCGCACATTCAGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCc < 2:587507‑M2/150‑2 (MQ=255) cAGTTACTGCGTTTCGGTTTGTGGGCGCACATTCAGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGCAAGGCGGggtcaaccgccttactg < 2:916‑M1/150‑18 (MQ=255) ggCGTTTCGGTTTGTGGGCGCACATTCAGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTa > 2:276471/1‑150 (MQ=255) cGGTTTGTGGGCGCACATTCAGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGaaaa < 1:276471/150‑1 (MQ=255) ggCGCACATTCAGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGAc < 1:739055/150‑1 (MQ=255) aGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTg < 1:24711/126‑1 (MQ=255) aGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTg > 2:24711/1‑126 (MQ=255) aGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCt > 1:293024/1‑150 (MQ=255) ggTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCtt > 2:493057/1‑150 (MQ=255) cccAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTAtt < 1:43173/116‑1 (MQ=255) cccAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTAtt > 2:43173/1‑116 (MQ=255) ccAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGGGG‑TCAACcgccttactggcaatg > 2:74733‑M2/1‑96 (MQ=255) ccAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGGGG‑TCAACcgccttactggcaatg < 1:74733‑M2/112‑17 (MQ=255) cAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGGGG‑TCAACcgccttactggcaatg > 1:114466‑M2/1‑95 (MQ=255) cAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑GGTCAACcgccttactggcaatg < 2:114466‑M2/111‑17 (MQ=255) gggCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCt > 2:665561/1‑150 (MQ=255) cACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGt < 1:493057/150‑1 (MQ=255) cgaggTTCTATGAAGAGGGCATTGCGAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCATCGTATTGAAAAGAGCCTGACTGATTGCCCCTCCTGGATTCCTGGCAGCTTTCTGGCTGCGACCTTCGCCAGACAGCTGGCGATGTGCGAGGTgg < 2:375423/147‑1 (MQ=255) gAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGc < 2:556036/113‑1 (MQ=255) gAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGc > 1:556036/1‑113 (MQ=255) cATTGCCAGTAAGGC‑Ggttgaccccgccttactggcaatggcctcttcatagaaccgcgtgatatccagcggcaccgccatcaattccgtacggttgccctgcctgacttgg < 1:74733‑M1/112‑97 (MQ=255) cATTGCCAGTAAGGC‑Ggttgaccccgccttactggcaatggcctcttcatagaaccgcgtgatatccagcggcaccgccatcaattccgtacggttgccctgcctgacttgg > 2:74733‑M1/1‑16 (MQ=255) cATTGCCAGTAAGGC‑Ggttgaccccgccttactggcaatggcctcttcatagaaccgcgtgatatccagcggcaccgccatcaattccgtacggttgccctgcctgacttg > 1:114466‑M1/1‑16 (MQ=255) cATTGCCAGTAAGGC‑Ggttgaccccgccttactggcaatggcctcttcatagaaccgcgtgatatccagcggcaccgccatcaattccgtacggttgccctgcctgacttg < 2:114466‑M1/111‑96 (MQ=255) cAGTAAGGCGG‑T‑TGACCccgccttgctggcaatggcctcttcatagaaccgcgtgatatccagcggcaccgccatcaattccgtacggttgccctgcctgacttggggagcaacctgaatgtgcgcccacaaaccgaaacgcagtaactg < 2:916‑M2/150‑134 (MQ=255) gggtcaaccgccttactggcaatggcctcttcatagaaccgcgtgatatccagcggcaccgccatcaattccgtacggttgccctgcctgacttggggagcaacctgaatgtgcgcccacaaaccgaaacgccgtaactggtagccggta < 2:587507‑M1/150‑150 (MQ=255) | GCTACCGGCTACCAGTTACGGCGTTTCGGTTTGTGGGCGCACATTCAGGTTGCTCCCCAAGTCAGGCAGGGCAACCGTACGGAATTGATGGCGGTGCCGCTGGATATCACGCGGTTCTATGAAGAGGCCATTGCCAGTAAGGCGG‑T‑TGACCCCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTG > NC_002947/3002738‑3003029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |