New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3057317 =	36 (1.220)	4 (0.140)	4/234	NT	10.5%	coding (74/990 nt)	PP_2669	outer membrane protein
	?	NC_002947	3057349 =	34 (1.210)					coding (42/990 nt)	PP_2669	outer membrane protein

CAGCAGCTTGCTGTCGTGTGACAGCAGCAAGCCACGCGGGCGCTGGCCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTACACGTCACTTCGGGCTTGTCATAGCCC  >  NC_002947/3057169‑3057460                                                                                                                                                     |                                                                                                                                                gggcttcctgcatcccttcaacgaaatggacagcctgggctatgacaagcccgaagtgacgtgtagctacccctgacccgacaaccacaacaataaggaatccgccatgcgccgccccctcttccaccgggccctgctttaccccagcct                                                                                                                                                >  1:655913‑M1/149‑150 (MQ=255)  agcagcTTGCTGTCGTGTGACAGCAGCAAGCCACGCGGGCGCTAGCCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGActg                                                                                                                                               >  2:578206/1‑150 (MQ=255)     ttcctgcatcccttcaacgaaatggacagcctgggctatgacaagcccgaagtgacgtgtagctacccctgacccgacaaccacaacaataaggaatccgccatgcgccgccccctcttccaccgggccctgctttaccccagcctgctg                                                                                                                                            <  1:36406‑M1/6‑1 (MQ=255)             gTCGTGTGACAGCAGCAAGCCACGCGGGCGCTGGCCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAgcgc                                                                                                                                    <  2:674096/150‑1 (MQ=255)                 ttcaacgaaatggacagcctgggctatgacaagcccgaagtgacgtgtagctacccctgacccgacaaccacaacaataaggaatccgccatgcgccgccccctcttccaccgggccctgctttaccccagcCTGCTGGCCAGCGCCAgg                                                                                                                                <  1:585217‑M1/18‑1 (MQ=255)                    gccggccgcaAGCCACGCGTGCGCTGGCCCACCGGCAGGGTTGCGATGACTTCCAGCGTTGGCAGGTCGATCAGGCTGAGGCTGTTTTCATTCTCGTTGGAAACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGgcg                                                                                                                             >  2:132139/8‑150 (MQ=255)                       agcagcAAGCCACGCGGGCGCTGGCCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGccc                                                                                                                          >  1:99433/1‑150 (MQ=255)                        gcagcaAGCCACGCGGGGGCTGGCCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCg                                                                                                                         <  2:192739/150‑1 (MQ=255)                                ccACGCGGGCGCTGACCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAgg                                                                                                                 >  1:293146/1‑150 (MQ=255)                                     cgGGCGCTGGCCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTggg                                                                                                            <  2:99433/150‑1 (MQ=255)                                     cgGGCGCTGGCCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTggg                                                                                                            <  2:548517/150‑1 (MQ=255)                                     cgGGCGCTGACCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTggg                                                                                                            <  2:293146/150‑1 (MQ=255)                                                ccACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTgg                                                                                                             <  2:480539/138‑1 (MQ=255)                                                ccACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTgg                                                                                                             >  1:480539/1‑138 (MQ=255)                                                                ggTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAgggg                                                                                 >  1:354342/1‑150 (MQ=255)                                                                 gTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAggggg                                                                                <  2:354342/150‑1 (MQ=255)                                                                      ttCCAGCGTTTGCAGGTCGATCAGGCTAAGAATAATCCGCTGCTCGTTTTATACCGATGGGGTGGCAGCTATGGTGTGAAAGTTATGCAGCGCCGCGTCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGgcggcg                                                                           >  1:181788/1‑150 (MQ=255)                                                                        ccAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCa                                                                         >  2:675887/1‑150 (MQ=255)                                                                         cAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCAt                                                                        >  1:656649/1‑150 (MQ=255)                                                                             gTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCg                                                                    <  1:380602/150‑1 (MQ=255)                                                                                   aGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGaa                                                                                       <  1:367067/125‑1 (MQ=255)                                                                                   aGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGaa                                                                                       >  2:367067/1‑125 (MQ=255)                                                                                          tCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTAttgt                                                       >  1:603252/1‑150 (MQ=255)                                                                                           caataaggaatccgccatgcgccgccccctcttccaccgggccctgctttaccccagcCTGCTGGCCAGCGCCAGGGCGCCCGAc                                                                                                                       <  2:66449‑M1/27‑1 (MQ=255)                                                                                           caataaggaatccgccatgcgccgccccctcttccaccgggccctgctttaccccagcCTGCTGGCCAGCGCCAGGGCGCCCGAc                                                                                                                       >  1:66449‑M1/59‑85 (MQ=255)                                                                                                        ttgtCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTgggg                                                                                                           >  1:296358/1‑84 (MQ=255)                                                                                                        ttgtCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTgggg                                                                                                           <  2:296358/84‑1 (MQ=255)                                                                                                           tCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATtgttgt                                                    >  2:534330/1‑136 (MQ=255)                                                                                                           tCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATtgttgt                                                    <  1:534330/136‑1 (MQ=255)                                                                                                                   gTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCt                              >  2:36406/1‑150 (MQ=255)                                                                                                                     tGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTac                            <  2:537471/150‑1 (MQ=255)                                                                                                                       gagaCCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTacac                          >  1:285169/1‑150 (MQ=255)                                                                                                                          aCCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGccc                                                                                              >  1:423395/1‑79 (MQ=255)                                                                                                                          aCCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGccc                                                                                              <  2:423395/79‑1 (MQ=255)                                                                                                                            ccAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTtgtg                                                   <  2:351656/120‑1 (MQ=255)                                                                                                                            ccAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTtgtg                                                   >  1:351656/1‑120 (MQ=255)                                                                                                                               ggCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCCGGCTACGGGGCCTGGCCGCCGGGTGGAAGAGGGTTTTTCGAATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTACACGTCACTTc                  <  1:578206/150‑1 (MQ=255)                                                                                                                                 cGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTACACGTCACTTCgg                <  2:656649/150‑1 (MQ=255)                                                                                                                                     ggCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCACATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTACACGTCACTTCGGGCtt            <  1:132139/150‑1 (MQ=255)                                                                                                                                           cATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTACACGTCACTTCGGGCTTGTCATa      >  1:224560/1‑150 (MQ=255)                                                                                                                                               gtgtGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGa                                                                  <  2:460866/86‑1 (MQ=255)                                                                                                                                               gtgtGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGa                                                                  >  1:460866/1‑86 (MQ=255)                                                                                                                                               cccagcCTGCTGTCGGGCGCCCTGGCGCTGGCCAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTACACGTCACTTCGGGCTTGTCATAGccc  <  2:585217‑M1/144‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                CAGCAGCTTGCTGTCGTGTGACAGCAGCAAGCCACGCGGGCGCTGGCCCACCGGCAGGGTTTCGGTGACTTCCAGCGTTTGCAGGTCGATCAGGCTGAGGCTGTTGTCCTTCTCGTTGGAGACCCAGGCGGTGGCAGCCATGGTGTGACTGCTGGCCAGCGCCAGGGCGCCCGACAGCAGGCTGGGGTAAAGCAGGGCCCGGTGGAAGAGGGGGCGGCGCATGGCGGATTCCTTATTGTTGTGGTTGTCGGGTCAGGGGTAGCTACACGTCACTTCGGGCTTGTCATAGCCC  >  NC_002947/3057169‑3057460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.