| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3595947 | 31 (1.050) | 5 (0.170) | 5/238 | NT | 14.3% | intergenic (‑462/+4) | PP_3172/nemA | group II intron‑encoding maturase/FMN‑linked N‑ethylmaleimide reductase |
| ? | NC_002947 | = 4393488 | NA (NA) | intergenic (‑430/+40) | PP_3868/PP_3869 | group II intron‑encoding maturase/sheath protein | |||||
GGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGGCGCTTGCAGCCGCAGACGCTCCACCAGGTCAGGGTTGGCAATGTAGGCGCGCCCGAACGCC > NC_002947/3595800‑3596095 | ggCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGc > 1:364269/1‑150 (MQ=255) aaCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCTCTTGC‑AG‑GCGCCCGTTTTTtgt > 2:212924‑M1/1‑144 (MQ=255) aaCACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCTCTTGC‑AG‑GCGCCCGTTTTTtgt < 1:212924‑M1/147‑4 (MQ=255) cacTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAg < 2:301397/150‑1 (MQ=255) ttCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCt > 2:247589/1‑150 (MQ=255) tCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTg < 1:27064/150‑1 (MQ=255) cTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGCGTTGCGCTTACGCGCACCGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGtata > 1:364909/1‑150 (MQ=255) tttCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATAc > 1:112068/1‑150 (MQ=255) tgcACCCCCAAGTCACCCACTTGGCCACCACAACCAAGCTGGTTGCGATCACGCCCAACGCGCCACGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCACCAGCGCCCGTTGTTGCATCAAGACTGCTTCAGGAACGGATAATCCGTATAcc < 1:424068/148‑1 (MQ=21) aCCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCtt < 1:247589/150‑1 (MQ=255) aCCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCtt < 2:467248/150‑1 (MQ=255) tCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGGTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATAGCATTCaa > 1:11315/1‑149 (MQ=255) aCCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTg > 2:433894/1‑150 (MQ=255) cccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCCTCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTgg < 2:112068/150‑1 (MQ=255) ttGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACg > 2:643882/1‑115 (MQ=255) ttGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACg < 1:643882/115‑1 (MQ=255) caccacAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGaa < 2:364269/150‑1 (MQ=255) tGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCAtt > 1:278467/1‑150 (MQ=255) gcgcAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGgcgc > 1:91752/1‑150 (MQ=255) aaCGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGtat > 1:760099/1‑91 (MQ=255) aaCGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGtat < 2:760099/91‑1 (MQ=255) aTGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATc < 1:449431/78‑1 (MQ=255) aTGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATc > 2:449431/1‑78 (MQ=255) ggagcACCCAAGAAACGCGCGT‑C‑TGCAATAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGGCGCTTGCAGCCGCAGACGCTc > 2:772784/4‑150 (MQ=255) gcACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCCGCGGCGCTTGCAGCCGCAGACGCTccac > 1:110338/1‑150 (MQ=255) acaAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTtgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaa > 1:395783‑M1/1‑35 (MQ=255) acaAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTtgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaa < 2:395783‑M1/73‑39 (MQ=255) acaAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGGCGCTTGCAGCCGCAGACGCTCCACCAgg > 2:542790/1‑150 (MQ=255) aaaaaCGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTtgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaag < 1:362231‑M1/140‑109 (MQ=255) aaaaaCGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTtgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaag > 2:362231‑M1/1‑32 (MQ=255) aCGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGGCGCTTGCAGCCGCAGACGCTCCACCAGGTCAGGGt > 1:361162/1‑150 (MQ=255) gggCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGgcgc < 1:389462/116‑1 (MQ=255) gggCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGgcgc > 2:389462/1‑116 (MQ=255) tGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAAt < 2:410609/78‑1 (MQ=255) tGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAAt > 1:410609/1‑78 (MQ=255) aaGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGGCGCTTGCAGCCGCAGACGCTCCACCAGGTCAGGGTTGGCAATGTAgg < 1:433894/150‑1 (MQ=255) agCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGGCGCTTGCAGCCGCAGACGCTCCACCAGGTCAGGGTTGGCAATGTAGgcgc < 1:542790/150‑1 (MQ=255) gcCCGTTTTTtgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaagtgttagccggaggcaagggtgtcgcgggtgac < 1:302894‑M1/150‑141 (MQ=255) gcCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGGCGCTTGCAGCCGCAGACGCTCCACCAGGTCAGGGTTGGCAATGTAGGCGCGcc > 2:77010/1‑150 (MQ=255) ccGTTTTTtgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaagtgt > 1:750828‑M1/1‑8 (MQ=255) ccGTTTTTtgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaagtgt < 2:750828‑M1/119‑112 (MQ=255) tttttgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaagtgttagccggaggcaagggtgtcgcgggtgaccgcgaa < 1:532210‑M1/150‑147 (MQ=255) tttttgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaagtgttagccggaggcaagggtgtcgcgggtgaccgcgaa < 1:598632‑M1/150‑147 (MQ=255) ttttgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaagtgttagccggaggcaagggtgtcgcgggtgaccgcgaat < 2:149330‑M1/150‑148 (MQ=255) tttgtgtgcgccaggcatggcgcgttgcgcgtaagcgcaacccgcttggttgtggtggccaagtgggtgacttggaggtgaaagtcctctacacacccggcaaggggaagtgttagccggaggcaagggtgtcgcgggtgaccgcgaatc < 2:706245‑M1/150‑149 (MQ=255) | GGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGC‑C‑TGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGCGTAATCGAACTTCGCCCGGTGCTCATTCAGCGGCGCTTGCAGCCGCAGACGCTCCACCAGGTCAGGGTTGGCAATGTAGGCGCGCCCGAACGCC > NC_002947/3595800‑3596095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |