New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3777873 =	16 (0.540)	4 (0.140)	4/232	NT	23.5%	coding (884/2052 nt)	PP_3340	TonB‑dependent receptor
	?	NC_002947	3777900 =	11 (0.390)					coding (911/2052 nt)	PP_3340	TonB‑dependent receptor

CGCCACTACGAGTCCGAAGCCCAGGAGGCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACCTACCTCAACACCTATGACGACCGACGCTGGACGCAGTACTGGCGCACCAGTTCACAGCAGGAACGCGACACCTACGAGGATCAGTACGGTGCCA  >  NC_002947/3777728‑3777998                                                                                                                                                  |                                                                                                                              aaggcgtgcagccagtccacctgtggtcgccaggtcagcgaggtgatggcaccgtactgatcctcgtaggtgtcgcgttcctgctgtgaactggtgcgccagtactgcgtccagcgtcggtcgtcataggtgttgaggtaggtctTGGcc                                                                                                                           <  2:452001‑M1/5‑1 (MQ=255)  gccACTACGAGTCCGAAGCCCAGGAGGCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCg                                                                                                                          >  2:332677/1‑150 (MQ=255)    cACTACGAGTCCGAAGCCCAGGAGGCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCgac                                                                                                                        >  2:247432/1‑149 (MQ=255)               cGAAGCCCAGGAGGCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTg                                                                                                             <  1:263354/150‑1 (MQ=255)                gAAGCCCAGGAGGCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCTGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTgg                                                                                                            >  2:67220/1‑150 (MQ=255)                      cAGGAGGCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTg                                                                                                             <  2:444238/143‑1 (MQ=255)                      cAGGAGGCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTg                                                                                                             >  1:444238/1‑143 (MQ=255)                       aggaggCCGGCTAACTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCa                                                                                                     >  2:794025/1‑150 (MQ=255)                         gaggCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAg                                                                                                   <  1:19193/150‑1 (MQ=255)                           tcgccaggtcagcgaggtgatggcaccgtactgatcctcgtaggtgtcgcgttcctgctgtgaactggtgcgccagtactgcgtccagcgtcggtcgtcataggtgttgaggtaggtctTgg                                                                                                                             <  2:88590‑M1/3‑1 (MQ=255)                           tcgccaggtcagcgaggtgatggcaccgtactgatcctcgtaggtgtcgcgttcctgctgtgaactggtgcgccagtactgcgtccagcgtcggtcgtcataggtgttgaggtaggtctTgg                                                                                                                             >  1:88590‑M1/120‑122 (MQ=255)                                  tACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACCTACCTc                                                                                          <  1:332677/150‑1 (MQ=255)                                           gAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACCTACCTCAACACCTAt                                                                                 >  2:737231/1‑150 (MQ=255)                                                        gccATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACCTACCTCAACACCTATGACGACCGACGCt                                                                    >  1:85314/1‑150 (MQ=255)                                                                                   aCAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACCTACCTCAACACCTATGACGACCGACGCTGGACGCAGTACTGGCGCACCAGTTcac                                         >  1:452001/1‑150 (MQ=255)                                                                                     tgtgaactggtgcgccagtactgcgtccagcgtcggtcgtcataggtgttgaggtaggtctTGGCCGAGACCCTGTCCTGGTCGGCCAAGa                                                                                                  >  2:129559‑M1/62‑91 (MQ=255)                                                                                     tgtgaactggtgcgccagtactgcgtccagcgtcggtcgtcataggtgttgaggtaggtctTGGCCGAGACCCTGTCCTGGTCGGCCAAGa                                                                                                  <  1:129559‑M1/30‑1 (MQ=255)                                                                                                 aaaGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACCTACCTCAACACCTATGACGACCGACGCTGGACGCAGTACTGGCGCACCAGTTCACAGCAGGAACGCGac                           >  1:208350/1‑150 (MQ=255)                                                                                                          tgcgtccagcgtcggtcgtcataggtgttgaggtaggtctTGGCCGAGACCCTGTCCTGGTCGGCCa                                                                                                     >  1:569478‑M1/41‑67 (MQ=255)                                                                                                          tgcgtccagcgtcggtcgtcataggtgttgaggtaggtctTGGCCGAGACCCTGTCCTGGTCGGCCa                                                                                                     <  2:569478‑M1/27‑1 (MQ=255)                                                                                                                          tCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACCTACCTCAACACCTATGACGACCGACGCTGGACGCAGTACTGGCGCACCAGTTCACAGCAGGAACGCGACACCTACGAGGATCAGTACGGTGCCa  <  1:371035/150‑1 (MQ=255)                                                                                                                                tGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACATACCTCAACACCTATGAcgaccga                                                                        <  2:378136/74‑1 (MQ=255)                                                                                                                                tGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACATACCTCAACACCTATGAcgaccga                                                                        >  1:378136/1‑74 (MQ=255)                                                                                                                                                  |                                                                                                                              CGCCACTACGAGTCCGAAGCCCAGGAGGCCGGCTACCTGACCGAGGATGACGCCCGCCATCATCCGCGCATGAGCAATGACTACAACGCCACGGACAAAGGCACGCGGCGAATGAACCAGGTCAGCGTGCACTTCGACACCGACCTGGCCGAGACCCTGTCCTGGTCGGCCAAGACCTACCTCAACACCTATGACGACCGACGCTGGACGCAGTACTGGCGCACCAGTTCACAGCAGGAACGCGACACCTACGAGGATCAGTACGGTGCCA  >  NC_002947/3777728‑3777998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.