New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3928383 =	37 (1.250)	5 (0.200)	5/212	NT	16.7%	intergenic (+15/‑125)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	3928464 =	18 (0.710)					intergenic (+96/‑44)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein

TCAACTGCCACAGCGCGCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCAC  >  NC_002947/3928238‑3928530                                                                                                                                                  |                                                                                                                                                    tcggcgttgagggtggtgccatcgtggttgtacagctcgtaggcttggctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGc                                                                                                                                                 >  1:639076‑M1/146‑150 (MQ=255) tCAACTGCCACAGCGCGCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGc                                                                                                                                                 <  2:654789/150‑1 (MQ=255)      tGCCACAGCGCGCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCtt                                                                                                                                            >  2:781078/1‑150 (MQ=255)      tGCCACAGCGCGCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCtt                                                                                                                                            >  1:321273/1‑150 (MQ=255)        ccACAGCGCGCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCATCTTcg                                                                                                                                          >  1:664764/1‑150 (MQ=255)           gggtggtgccatcgtggttgtacagctcgtaggcttggctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGCCTCTTCGCgg                                                                                                                                       >  2:197724‑M1/136‑150 (MQ=255)               gcgcTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTaa                                                                                                                                   >  2:241924/1‑150 (MQ=255)                 gcTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAAc                                                                                                                                 <  2:321273/150‑1 (MQ=255)                        ccGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTcc                                                                                                                          >  1:53744/1‑150 (MQ=255)                         tggttgtacagctcgtaggcttggctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGCCTCTTcgc                                                                                                                                         >  2:154777‑M1/122‑134 (MQ=255)                         tggttgtacagctcgtaggcttggctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGCCTCTTcgc                                                                                                                                         <  1:154777‑M1/13‑1 (MQ=255)                               tGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTacacaa                                                                                                                   <  2:335368/150‑3 (MQ=255)                                 ccGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCgg                                                                                                                                       <  2:329404/128‑1 (MQ=255)                                 ccGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCgg                                                                                                                                       >  1:329404/1‑128 (MQ=255)                                  agctcgtaggcttggctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGCCTCTTCGCgg                                                                                                                                       >  2:59883‑M1/113‑127 (MQ=255)                                  agctcgtaggcttggctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGCCTCTTCGCgg                                                                                                                                       <  1:59883‑M1/15‑1 (MQ=255)                                           gCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGc                                                                                                       >  1:676078/1‑150 (MQ=255)                                            cTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGcc                                                                                                      <  1:781078/150‑1 (MQ=255)                                                        tGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCCGGTAAAGGCCCGCGTATACCAGGGAGGACAGGCCCTTCAGGAGAgg                                                                                          >  2:564286/1‑150 (MQ=255)                                                         ggCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGGGCGTTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCggg                                                                                         <  1:439507/150‑1 (MQ=255)                                                         ggCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCggg                                                                                         <  2:695376/150‑1 (MQ=255)                                                         ggCGGTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCggg                                                                                         <  2:17871/150‑1 (MQ=255)                                                                  cGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCATCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCcgc                                                                                <  2:664764/150‑1 (MQ=255)                                                                       gaTGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                           <  2:185759/150‑1 (MQ=255)                                                                         tGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAgg                                                                         <  2:676078/150‑1 (MQ=255)                                                                            aatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                      >  1:67562‑M1/71‑150 (MQ=255)                                                                                 gCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                                       <  1:314965/144‑1 (MQ=255)                                                                                 gCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                                       >  2:314965/1‑144 (MQ=255)                                                                                    ggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCAc                                                                                    <  2:221951‑M1/66‑1 (MQ=255)                                                                                    ggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCAc                                                                                    >  1:221951‑M1/63‑128 (MQ=255)                                                                                      cATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaa                                                            <  1:43737/150‑1 (MQ=255)                                                                                       aTCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaac                                                           >  2:753077/1‑150 (MQ=255)                                                                                        tCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCggg                                                                                         >  2:362526/1‑119 (MQ=255)                                                                                        tCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCggg                                                                                         <  1:362526/119‑1 (MQ=255)                                                                                              aTTACACCGATCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACaaaaaaa                                                    <  1:632529/150‑1 (MQ=255)                                                                                                 acacGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                 <  1:241924/150‑1 (MQ=255)                                                                                                           gAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCCCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAAc                                       >  1:29098/1‑150 (MQ=255)                                                                                                            aaaTCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTa                                                                                                 >  2:106909/1‑91 (MQ=255)                                                                                                            aaaTCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTa                                                                                                 <  1:106909/91‑1 (MQ=255)                                                                                                                  gtgtTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCAt                                    >  1:754590/1‑146 (MQ=255)                                                                                                                  gtgtTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCAt                                    <  2:754590/146‑1 (MQ=255)                                                                                                                    gtttttattgttgtttttttgttgcctgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCcgc                                                                                <  2:386442‑M1/70‑1 (MQ=255)                                                                                                                    gtttttattgttgtttttttgttgcctgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCcgc                                                                                >  1:386442‑M1/31‑100 (MQ=255)                                                                                                                         tCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTCAACACGCTCATAAAAAACGAACCACAAGCCCTGTAGGAGCCGGGCCGCCCGCGAAATTGCGCCCACATGCAACAAAAAAACAACAATAAAAACCATGGAGCAAcccc                         >  2:488257/1‑150 (MQ=255)                                                                                                                         tCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCgg                                                                                          <  2:240280/85‑1 (MQ=255)                                                                                                                         tCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCgg                                                                                          >  1:240280/1‑85 (MQ=255)                                                                                                                                  gATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGcac                <  1:753077/150‑1 (MQ=255)                                                                                                                                        ttttCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACaaaaaaa                                                    >  2:583177/1‑108 (MQ=255)                                                                                                                                        ttttCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACaaaaaaa                                                    <  1:583177/108‑1 (MQ=255)                                                                                                                                                tACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACCCACTCGCCTGcac  >  1:548043/1‑150 (MQ=255)                                                                                                                                                  CCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaac                                                >  2:135966‑M1/1‑102 (MQ=255)                                                                                                                                                  CCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaac                                                <  1:135966‑M1/102‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    TCAACTGCCACAGCGCGCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCAC  >  NC_002947/3928238‑3928530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.