New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4268676	29 (0.980)	3 (0.110)	3/234	NT	12.1%	coding (669/1341 nt)	PP_3740	MFS transporter
	?	NC_002947	= 4268725	16 (0.570)					coding (620/1341 nt)	PP_3740	MFS transporter

ACGAAGTAGAAGCCGAACATGACCAGGAAGAACAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCG  >  NC_002947/4268530‑4268825                                                                                                                                                   |                                                                                                                                                      aCGAAGTAGAAGCCGAACATGACCAGGAAGAACAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTgg                                                                                                                                                    >  1:367619/1‑150 (MQ=255)          aaGCCGAACATGACCAGGAAGAACAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGgcgc                                                                                                                                           >  1:102378/1‑150 (MQ=255)              cGAACATGACCAGGAAGAACAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGgc                                                                                                                                             >  1:133133/1‑144 (MQ=255)              cGAACATGACCAGGAAGAACAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGgc                                                                                                                                             <  2:133133/144‑1 (MQ=255)                        cAGGAAGAACAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGtt                                                                                                                             <  2:367619/150‑1 (MQ=255)                        cAGGAAGAACAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGtt                                                                                                                             >  1:704134/1‑150 (MQ=255)                                 cAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGc                                                                                                                    >  1:638711/1‑150 (MQ=255)                                        cAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGATGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCa                                                                                                             <  2:704134/150‑1 (MQ=255)                                          gATCACCAGCGTGGTGCGGCGCAGGGCCGGCGCCAGAAGCTGCCTGATCCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCAtt                                                                                                           <  1:95017/150‑1 (MQ=255)                                           aTCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTg                                                                                                          <  2:638711/150‑1 (MQ=255)                                             cACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTTCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGc                                                                                                                                 <  2:592402/125‑1 (MQ=255)                                             cACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGc                                                                                                                                 >  1:592402/1‑125 (MQ=255)                                             cACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCGAGAGCATTggc                                                                                                        >  2:141046/1‑150 (MQ=255)                                                cAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCcggccaatgctctggcccgggtcaaccgcctggccgtgcgccttggccag                                                                                                     <  1:61064‑M1/150‑51 (MQ=255)                                                cAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGc                                                                                                              >  1:212800/1‑141 (MQ=255)                                                cAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGc                                                                                                              <  2:212800/141‑1 (MQ=255)                                                cAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGg                                                                                                     >  2:328657‑M2/1‑149 (MQ=255)                                                   cGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccg                                                                                                  >  1:689489‑M2/1‑146 (MQ=255)                                                    gtggtgCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccgg                                                                                                 >  2:574740‑M2/1‑145 (MQ=255)                                                     tggtgCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggc                                                                                                >  1:88019‑M2/1‑144 (MQ=255)                                                       gtgCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGt                                                                                              <  2:597349/150‑1 (MQ=255)                                                         gcggcgCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGc                                                                                            <  2:736461/150‑1 (MQ=255)                                                                        cgcCATCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCTACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAg                                                                             <  1:333538/150‑1 (MQ=255)                                                                             gcagcTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCcggccaatgctctggcccgggtcaaccgcctggccgtgcgccttggccagcc                                                                                                   >  1:251783‑M1/1‑71 (MQ=255)                                                                             gcagcTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCcggccaatgctctggcccgggtcaaccgcctggccgtgcgccttggccagcc                                                                                                   <  2:251783‑M1/123‑53 (MQ=255)                                                                             gcagcTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGAct                                                                        <  1:489190/150‑1 (MQ=255)                                                                                            cGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCAcagca                                                         <  2:102378/150‑1 (MQ=255)                                                                                                tttGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCTAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGACAACCACAGCAGTAc                                                     <  1:141046/150‑1 (MQ=255)                                                                                                    gCACCCTCTGCCCTTGCGGCAACAGCAGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGc                                                 >  1:64406/1‑150 (MQ=255)                                                                                                         ctctGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGAt                                            >  2:539136/1‑150 (MQ=255)                                                                                                                     ggCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTgg                                                                                                         >  1:596613/1‑77 (MQ=255)                                                                                                                     ggCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTgg                                                                                                         <  2:596613/77‑1 (MQ=255)                                                                                                                                gTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGc                                                                            >  2:3182/1‑95 (MQ=255)                                                                                                                                gTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGc                                                                            <  1:3182/95‑1 (MQ=255)                                                                                                                                gTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGAcgccgc                     >  2:340591/1‑150 (MQ=255)                                                                                                                                       cgcCAATGCCGGCTGGCCAAGGCCCCCGTCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAg              <  1:114/150‑1 (MQ=255)                                                                                                                                             tGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATAc        <  1:261122/150‑1 (MQ=255)                                                                                                                                              gccggccggccaatgctctggcccgggtcaaccgcctggccgtgcgccttggccagccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgcacca       >  1:88019‑M1/1‑6 (MQ=255)                                                                                                                                               ccggccggccaatgctctggcccgggtcaaccgcctggccgtgcgccttggccagccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgcaccac      >  2:574740‑M1/1‑5 (MQ=255)                                                                                                                                                cggccggccaatgctctggcccgggtcaaccgcctggccgtgcgccttggccagccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgcaccacg     >  1:689489‑M1/1‑4 (MQ=255)                                                                                                                                                 ggCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgc                               <  2:251783‑M2/123‑72 (MQ=255)                                                                                                                                                 ggCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgc                               >  1:251783‑M2/1‑52 (MQ=255)                                                                                                                                                   ccggccaatgctctggcccgggtcaaccgcctggccgtgcgccttggccagccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgcaccacgctg  >  2:328657‑M1/1‑1 (MQ=255)                                                                                                                                                   cTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgcaccacgctg  <  1:61064‑M2/150‑101 (MQ=255)                                                                                                                                                   |                                                                                                                                                      ACGAAGTAGAAGCCGAACATGACCAGGAAGAACAGCAACCAGATCACCAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCGATCG  >  NC_002947/4268530‑4268825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.