New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4268676	29 (0.980)	3 (0.110)	3/234	NT	12.1%	coding (669/1341 nt)	PP_3740	MFS transporter
	?	NC_002947	= 4268725	16 (0.570)					coding (620/1341 nt)	PP_3740	MFS transporter

CAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACC‑GATCGCCAGCCCCAATGCCCCAGCAGCCATACCGCCAGCAAACCGCCAAGGGTC  >  NC_002947/4268577‑4268874                                                                                                                                                     |                                                                                                                                                       cAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGg                                                                                                                                                       >  2:328657‑M2/1‑149 (MQ=255)    cGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccg                                                                                                                                                    >  1:689489‑M2/1‑146 (MQ=255)     gtggtgCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccgg                                                                                                                                                   >  2:574740‑M2/1‑145 (MQ=255)      tggtgCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggc                                                                                                                                                  >  1:88019‑M2/1‑144 (MQ=255)        gtgCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGt                                                                                                                                                <  2:597349/150‑1 (MQ=255)          gcggcgCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGc                                                                                                                                              <  2:736461/150‑1 (MQ=255)                         cgcCATCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCTACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAg                                                                                                                               <  1:333538/150‑1 (MQ=255)                              gcagcTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGAct                                                                                                                          <  1:489190/150‑1 (MQ=255)                                             cGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCAcagca                                                                                                           <  2:102378/150‑1 (MQ=255)                                                 tttGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCTAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGACAACCACAGCAGTAc                                                                                                       <  1:141046/150‑1 (MQ=255)                                                     gCACCCTCTGCCCTTGCGGCAACAGCAGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGc                                                                                                   >  1:64406/1‑150 (MQ=255)                                                          ctctGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGAt                                                                                              >  2:539136/1‑150 (MQ=255)                                                                                 gTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGc                                                                                                                              <  1:3182/95‑1 (MQ=255)                                                                                 gTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGc                                                                                                                              >  2:3182/1‑95 (MQ=255)                                                                                 gTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGAcgccgc                                                                       >  2:340591/1‑150 (MQ=255)                                                                                        cgcCAATGCCGGCTGGCCAAGGCCCCCGTCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAg                                                                <  1:114/150‑1 (MQ=255)                                                                                              tGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATAc                                                          <  1:261122/150‑1 (MQ=255)                                                                                                  ggCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgc                                                                                 <  2:251783‑M2/123‑72 (MQ=255)                                                                                                  ggCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgc                                                                                 >  1:251783‑M2/1‑52 (MQ=255)                                                                                                    cTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGgccggcattggcgcaactaccggctgttgccgcaagggcagagggtgccaaaaccgggttcaggcagctgctggcgccggccatgcgccgcaccacgctg                                                    <  1:61064‑M2/150‑101 (MQ=255)                                                                                                          aaGGCGGACGTCCAGGCGGTTGACCCGGTCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACC‑GATCGCCAGcc                                             >  2:232532/1‑150 (MQ=255)                                                                                                          aaGGCGCACGGCCAGGCGGTTGACACGGGCGAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACCAGATCggagga                                              >  1:528566/1‑145 (MQ=255)                                                                                                                  cGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACC‑GATCGCCAGCCCCAATGcc                                     <  2:64406/150‑1 (MQ=255)                                                                                                                     ccAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACC‑GATCGCCAGCCCCAATGCCCca                                  <  1:221817/150‑1 (MQ=255)                                                                                                                                                tGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACC‑GATCGCCAGCCCCAATGCCCCAGCAGCCATACCGCCAGCAAACCGCCaa       <  1:232400/150‑1 (MQ=255)                                                                                                                                                  gccggccgGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACC‑GATCGCCAGCCCCAATGCCCCAGCAGCCATACCGCCAGCAAACCGCCAAgg     >  1:309695/1‑150 (MQ=255)                                                                                                                                                     ggccggcGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACC‑GATCGCCAGCCCCAATGCCCCAGCAGCCATACCGCCAGCAAACCGCCAAGGGTc  <  2:309695/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                       CAGCGTGGTGCGGCGCATGGCCGGCGCCAGCAGCTGCCTGAACCCGGTTTTGGCACCCTCTGCCCTTGCGGCAACAGCCGGTAGTTGCGCCAATGCCGGCTGGCCAAGGCGCACGGCCAGGCGGTTGACCCGGGCCAGAGCATTGGCCGGCCGGCGTGCCAGCAGAAAGTCCAGCGACTCTGGCAACCACAGCAGTACCAGCGGGATCACCAGTACGGTGACGACGCCGCCAAACAGAAATACC‑GATCGCCAGCCCCAATGCCCCAGCAGCCATACCGCCAGCAAACCGCCAAGGGTC  >  NC_002947/4268577‑4268874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.