New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5418233 =	38 (1.290)	3 (0.110)	3/234	NT	7.6%	coding (886/1368 nt)	PP_4758	MFS transporter
	?	NC_002947	5418256 =	37 (1.320)					coding (863/1368 nt)	PP_4758	MFS transporter

CCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTGGCGGTCCTTGAGCAGGTTCCAGGCCGACGGCCT  >  NC_002947/5418088‑5418380                                                                                                                                                  |                                                                                                                                                      gtgaggccatcggcgcggtcaggccgtcggcctggaacctgctcaaggaccgccagatcgtgctgttctgcctgatctacttctgcatccagctgaccatctatgccgccaccttctggctgcccagcatcatcaagcgtatgggCGAcc                                                                                                                                                   <  2:640633‑M1/5‑1 (MQ=255)  ccGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCt                                                                                                                                                  >  2:192422/1‑150 (MQ=255)      ggtggACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑t                                                                                                                                             <  2:357525/150‑1 (MQ=255)          gACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCa                                                                                                                                         <  2:744621/150‑1 (MQ=255)                   aTGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGGTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCg                                                                                                                               >  1:682305/1‑150 (MQ=255)                     gCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGcc                                                                                                                             <  1:192422/150‑1 (MQ=255)                           ggCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCGAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACg                                                                                                                       <  1:220067/150‑1 (MQ=255)                              aGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCtt                                                                                                                    <  2:712939/150‑1 (MQ=255)                                cGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTtga                                                                                                                  <  1:182179/150‑1 (MQ=255)                                 gACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTtgat                                                                                                                 >  1:659475/1‑150 (MQ=255)                                 gACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTtgat                                                                                                                 <  2:405878/150‑1 (MQ=255)                                  aCCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTtgatg                                                                                                                >  2:244312/1‑150 (MQ=255)                                    cagcagGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGATGGAAAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTgatgat                                                                                                              >  1:485099/1‑150 (MQ=255)                                                   cACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGaa                                                                                               >  2:659203/1‑150 (MQ=255)                                                    aCCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAg                                                                                              >  2:68556/1‑150 (MQ=255)                                                        aGGCCTCCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGACCGCGAGCAGCCCAGGGATCGAGACGAAGAAACCGCCCTGGA‑TGTACCTG‑AGGACGCCCATACGCTCGATGATGCTGGGCAGCCAGAcggcgg                                                                                          >  2:516066/1‑150 (MQ=255)                                                          gCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTggcg                                                                                        <  1:244312/150‑1 (MQ=255)                                                          gCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGAGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTggcg                                                                                        <  2:479013/150‑1 (MQ=255)                                                           ccTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTggcgg                                                                                       >  2:357577/1‑150 (MQ=255)                                                                  gAACTTCCAGCGAGCGGAACGGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGAt                                                                                >  2:180803/1‑150 (MQ=255)                                                                  gAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGAt                                                                                >  1:299096/1‑150 (MQ=255)                                                                  gAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAAAAGGTGGCGGCATAGAt                                                                                <  2:194132/150‑1 (MQ=255)                                                                      ttCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCT‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTc                                                                            >  2:302976/1‑150 (MQ=255)                                                                      ttCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTc                                                                            <  2:713443/150‑1 (MQ=255)                                                                             gagcgGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGa                                                                     <  1:68556/150‑1 (MQ=255)                                                                               gcgGAACCGGCGGTGAAGGCGTACATGGCCAGTAGCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGCTGCTGAGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATg                                                                   <  2:364023/150‑1 (MQ=255)                                                                                 ttctgcatccagctgaccatctatgccgccaccttctggctgcccagcatcatcaagcgtatgggCGACCTGCA‑TGTCACTG‑AGGTCGCCCATa                                                                                                                         >  1:774888‑M1/66‑94 (MQ=255)                                                                                 ttctgcatccagctgaccatctatgccgccaccttctggctgcccagcatcatcaagcgtatgggCGACCTGCA‑TGTCACTG‑AGGTCGCCCATa                                                                                                                         <  2:774888‑M1/29‑1 (MQ=255)                                                                                 ggAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATAAGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCa                                                                 >  2:185939/1‑150 (MQ=255)                                                                                        gcggcgAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAg                                                          <  1:180803/150‑1 (MQ=255)                                                                                          ggcgAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGAGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑GACGCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGAt                                                        <  1:651301/150‑1 (MQ=255)                                                                                          ggagAAGGCGTACATGGCCAGGATCGAGATCAGCCAAAGAAGCGAGTTGCAGAAACTGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCTGCATAGATGGTCAGCTGGATGCAGAAGTAGAt                                                        <  1:209460/147‑1 (MQ=255)                                                                                              aaGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCT‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAgg                                                    <  1:302976/150‑1 (MQ=255)                                                                                              aaGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATAAGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAgg                                                    <  1:185939/150‑1 (MQ=255)                                                                                                ggCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCa                                                  >  1:623546/1‑150 (MQ=255)                                                                                                            cAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCAt                                                                                                                          >  1:126634/1‑66 (MQ=255)                                                                                                            cAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCAt                                                                                                                          <  2:126634/66‑1 (MQ=255)                                                                                                                       tCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTgg                                  >  2:386032/1‑143 (MQ=255)                                                                                                                       tCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTgg                                  <  1:386032/143‑1 (MQ=255)                                                                                                                        ctgcccagcatcatcaagcgtatgggCGACCT‑CAGTGACA‑TGCAGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCGAACGGATATCAGGCAGAACAGCACGATCTGGCGGTCCtt                          <  2:662022‑M1/124‑1 (MQ=255)                                                                                                                                           aagaaACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTGGCGGTCCTTGAGCAg                    >  2:583989/1‑137 (MQ=255)                                                                                                                                           aagaaACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTGGCGGTCCTTGAGCAg                    <  1:583989/137‑1 (MQ=255)                                                                                                                                                cccGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTGGCGGTCCTTGAGCAGGTTCCAGGCCGACGGCCt  >  2:472188/2‑150 (MQ=255)                                                                                                                                                aCCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTGGCg                                >  2:422951/1‑120 (MQ=255)                                                                                                                                                aCCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTGGCg                                <  1:422951/120‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCTGCTGGAACTTCCAGCGAGCGGAACCGGCGGCGAAGGCGTACATGGCCAGGATCGAGATCAGCCAAGGGATCGAGTTGAAGAAACCGACCTGCA‑TGTCACTG‑AGGTCGCCCATACGCTTGATGATGCTGGGCAGCCAGAAGGTGGCGGCATAGATGGTCAGCTGGATGCAGAAGTAGATCAGGCAGAACAGCACGATCTGGCGGTCCTTGAGCAGGTTCCAGGCCGACGGCCT  >  NC_002947/5418088‑5418380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.