New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5570809	32 (1.080)	3 (0.110)	3/236	NT	8.4%	coding (445/1065 nt)	queG	epoxyqueuosine reductase
	?	NC_002947	= 5570823	35 (1.240)					coding (459/1065 nt)	queG	epoxyqueuosine reductase

GGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTT  >  NC_002947/5570661‑5570956                                                                                                                                                     |                                                                                                                                                     ggCCCACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCAGCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCt                                                                                                                                                     <  1:358690/150‑1 (MQ=255)    cTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGc                                                                                                                                                  >  2:356243/1‑150 (MQ=255)          gtCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACa                                                                                                                                           >  2:587231/1‑150 (MQ=255)                cTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGCTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCgg                                                                                                                                     >  1:698014‑M2/1‑148 (MQ=255)                 tACGCGCTTGGCCCGGATTACCACAACCTGGTTCGCAAGCGCGTGCAGTTCCTCGCCGCCCGCATCCAGGAAGCAACCGGCCCGTTCGGCTACCCCGCCTCCGTGGCCAGCGCCCCGGCCCCGGAAACAGCCCTGGCC‑CAACCGGCCgcg                                                                                                                                    >  2:62201/1‑148 (MQ=255)                            ccGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGAt                                                                                                                         >  2:728655/1‑150 (MQ=255)                                  ttACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCTGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCC‑GGCCTGTTCGGCCAgggctttttccagtaccggg                                                                                                                   >  1:275221‑M2/1‑130 (MQ=255)                                      cacaAGCTGGTGCGCAAGCGCGTGGAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGCCAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGTCTGGGTTGGATCGGCAAGAac                                                                                                               >  2:408215/1‑150 (MQ=255)                                       acaAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAaca                                                                                                              <  1:262176/150‑1 (MQ=255)                                                tGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACgctgctgc                                                                                                     <  2:282947/150‑1 (MQ=255)                                                        cgcgTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGc                                                                                             >  2:642037/1‑150 (MQ=255)                                                           gTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GACCAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCaaa                                                                                          <  1:62201/150‑1 (MQ=255)                                                           gTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCaaa                                                                                          >  1:754458/1‑150 (MQ=255)                                                             gCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGGAGGGTAAAAAGCCCTGGCC‑GAACAGGACGGGCTGCGTCGCATCGGCAGGGACACGCTGCTGCTCCACCGCAAAGc                                                                                        >  1:376363/1‑150 (MQ=255)                                                               aGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCgg                                                                                      <  1:598144/150‑1 (MQ=255)                                                                     tCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACCGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCt                                                                                >  2:153011/1‑150 (MQ=255)                                                                       cccGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTAc                                                                              <  1:98844/149‑1 (MQ=255)                                                                               cATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCt                                                                      >  2:671012/1‑150 (MQ=255)                                                                                            aTCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTtc                                                         >  1:395317/1‑150 (MQ=255)                                                                                             tCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTtcg                                                        >  2:44881/1‑150 (MQ=255)                                                                                                  ccGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGAc                                                   <  1:642037/150‑1 (MQ=255)                                                                                                   cGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGAcc                                                  <  2:376363/150‑1 (MQ=255)                                                                                                         gCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCggcctgttcggccagggctttttccagtaccg                                                                                                                      >  2:394569‑M1/1‑45 (MQ=255)                                                                                                         gCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCggcctgttcggccagggctttttccagtaccg                                                                                                                      <  1:394569‑M1/77‑33 (MQ=255)                                                                                                           tACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTg                                          >  1:534199/1‑150 (MQ=255)                                                                                                             ccGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGcc                                        <  1:587231/150‑1 (MQ=255)                                                                                                              cgcgCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCg                                       >  1:629286/1‑150 (MQ=255)                                                                                                              cgcgCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCg                                       <  2:754458/150‑1 (MQ=255)                                                                                                                 gcCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTg                                    <  1:671012/150‑1 (MQ=255)                                                                                                                  ccTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTgg                                   <  2:696088/150‑1 (MQ=255)                                                                                                                    ttCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGAc                                 <  1:728655/150‑1 (MQ=255)                                                                                                                       gTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGaa                              >  1:80138/1‑150 (MQ=255)                                                                                                                        tGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAg                             >  1:80220/1‑150 (MQ=255)                                                                                                                           aCAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGcc                           <  1:515414/149‑1 (MQ=255)                                                                                                                           aCAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCCGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGcc                           >  2:515414/1‑149 (MQ=255)                                                                                                                             aGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGccacc                        >  2:67148/1‑150 (MQ=255)                                                                                                                                  cccGGTACTGGAAAAAGCCCtggccgaacaggccgggctttttccagtaccggggcgctgtccacgaaggcgcggtagcagaacgggccgatggcttcctggatgcggtcggcgaggaactgcacgcgcttgcgcaccagcttgtggtaa                    >  1:275221‑M1/1‑20 (MQ=255)                                                                                                                                    cGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCgggctttttccagtaccggggcgctgtccacgaaggcgcggtagc                                                                                          >  2:394569‑M2/1‑32 (MQ=255)                                                                                                                                    cGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCgggctttttccagtaccggggcgctgtccacgaaggcgcggtagc                                                                                          <  1:394569‑M2/77‑46 (MQ=255)                                                                                                                                     ggTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGa                <  2:518841/150‑1 (MQ=255)                                                                                                                                           ggAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTg          <  2:367289/150‑1 (MQ=255)                                                                                                                                                    ccggcctgttcggccagggctttttccagtaccggggcgctgtccacgaaggcgcggtagccgaacgggccgatggcttcctggatgcggtcggcgaggagctgcacgcgcttgcgcaccagcttgtggtaatcccggccaagcgcgtag  >  1:698014‑M1/1‑2 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCC‑GAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTT  >  NC_002947/5570661‑5570956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.