New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5744325	36 (1.220)	4 (0.140)	4/238	NT	11.0%	coding (1596/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	= 5744356	30 (1.050)					coding (1565/2451 nt)	glgP	glycogen phosphorylase

GCCAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAG  >  NC_002947/5744178‑5744471                                                                                                                                                    |                                                                                                                                                   gCCAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGc                                                                                                                                                  >  2:15455/1‑150 (MQ=255)  ccAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGcc                                                                                                                                                 >  1:597974/1‑150 (MQ=255)           ttGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGcccagcggctgc                                                                                                                                        >  2:403450‑M1/1‑138 (MQ=255)              cGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTg                                                                                                                                     <  1:742051/150‑1 (MQ=255)               gTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGc                                                                                                                                    >  1:260542/1‑150 (MQ=255)                    gCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGc                                                                                                                               >  2:93921/1‑150 (MQ=255)                     ccTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCa                                                                                                                              >  2:388286/1‑150 (MQ=255)                     ccTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCa                                                                                                                              <  1:93921/150‑1 (MQ=255)                                    cGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGcccagcggctgcacagcaagcgcgccctggccagcat                                                                                                               <  1:403450‑M1/150‑38 (MQ=255)                                      gtgtGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCt                                                                                                                                   >  2:333635/1‑128 (MQ=255)                                      gtgtGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCt                                                                                                                                   <  1:333635/128‑1 (MQ=255)                                            aTCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTg                                                                                                       >  1:757924/1‑150 (MQ=255)                                             tCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGc                                                                                                      >  1:656254/1‑150 (MQ=255)                                              cAGGTTGAGCAACTGGCGCTTGTATTCGTGAATAAGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGTTGGGCAGCGAACTGTTTGCg                                                                                                     <  2:281375/150‑1 (MQ=255)                                                 gTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGaa                                                                                                  >  1:154532/1‑150 (MQ=255)                                                  ttGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAAc                                                                                                 <  2:689055/150‑1 (MQ=255)                                                      gCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCgg                                                                                             <  1:15455/150‑1 (MQ=255)                                                                cTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGc                                                                                   >  2:203831/1‑150 (MQ=255)                                                                 ttGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCtgtg                                                                                                                                <  2:554439/104‑1 (MQ=255)                                                                 ttGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCtgtg                                                                                                                                >  1:554439/1‑104 (MQ=255)                                                                 ttGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCg                                                                                  >  1:336427/1‑150 (MQ=255)                                                                    tATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAAc                                                                               <  1:754103/150‑1 (MQ=255)                                                                              tACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCtgt                                                                                                                                 >  2:542850/1‑90 (MQ=255)                                                                              tACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTCACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCtgt                                                                                                                                 <  1:542850/90‑1 (MQ=255)                                                                                      aCCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGcccagcggctgcacagcaagcgcgccctggccagcatcattcagg                                                                                                       <  1:458387‑M1/108‑46 (MQ=255)                                                                                      aCCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGcccagcggctgcacagcaagcgcgccctggccagcatcattcagg                                                                                                       >  2:458387‑M1/1‑63 (MQ=255)                                                                                       ccTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGaa                                                            <  1:531177/150‑1 (MQ=255)                                                                                       ccTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGaa                                                            <  2:165885/150‑1 (MQ=255)                                                                                       ccTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGaa                                                            <  2:656254/150‑1 (MQ=255)                                                                                               tCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGc                                                    <  2:260542/150‑1 (MQ=255)                                                                                                  aaTAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCggg                                                 <  1:203831/150‑1 (MQ=255)                                                                                                  aaTAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCggg                                                 >  1:22894/1‑150 (MQ=255)                                                                                                          cTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAAAAGCGTCTCCGGCTCGTCCtt                                         >  2:125268/1‑150 (MQ=255)                                                                                                            cGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGa                                       <  1:200590/150‑1 (MQ=255)                                                                                                                    aCCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCAGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGc                               <  2:757924/150‑1 (MQ=255)                                                                                                                     ccGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTAACCCAATACGGGTTTGGCGGCGAACGGCCCCAAGACCGCAAGAAGCAACTGCGGGGCGTTCTTTAGTTCCGGcc                              >  1:536186/1‑150 (MQ=255)                                                                                                                         gACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAg                          >  1:6086/1‑150 (MQ=255)                                                                                                                                      tCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGc             <  2:22894/150‑1 (MQ=255)                                                                                                                                       ccTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGcagcatcattcaggatcgcatcggcgtcacggtcaaccccgaggcgctattcgacgttcaggt                                                      >  2:458387‑M2/1‑45 (MQ=255)                                                                                                                                       ccTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGcagcatcattcaggatcgcatcggcgtcacggtcaaccccgaggcgctattcgacgttcaggt                                                      <  1:458387‑M2/108‑64 (MQ=255)                                                                                                                                        cTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCAt           <  2:154532/150‑1 (MQ=255)                                                                                                                                         tGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATg          >  1:745127/1‑150 (MQ=255)                                                                                                                                         tGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATg          >  2:703175/1‑150 (MQ=255)                                                                                                                                            atgatgCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCg       <  2:336427/150‑1 (MQ=255)                                                                                                                                               atgCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGcagcatcattcaggatcgcatcggcgtcacggtcaaccccgaggcgctattcgacgttcaggttaaacgtattcacgaatacaagcgccagttgctcaacctgatgcacaccg    <  1:403450‑M2/150‑114 (MQ=255)                                                                                                                                                 gCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAg  >  1:422056/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCAGGTTCGTTGCGTATGGCCTGGTACAGTGCAACGGTGTGCATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAG  >  NC_002947/5744178‑5744471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.