New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5744325	36 (1.220)	4 (0.140)	4/238	NT	11.0%	coding (1596/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	= 5744356	30 (1.050)					coding (1565/2451 nt)	glgP	glycogen phosphorylase

ATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAGCTGAGGGTTGGACTGGTACAACC  >  NC_002947/5744221‑5744494                                                                                                                                        |                                                                                                                                           aTCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTg                                                                                                                              >  1:757924/1‑150 (MQ=255)  tCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGc                                                                                                                             >  1:656254/1‑150 (MQ=255)   cAGGTTGAGCAACTGGCGCTTGTATTCGTGAATAAGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGTTGGGCAGCGAACTGTTTGCg                                                                                                                            <  2:281375/150‑1 (MQ=255)      gTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGaa                                                                                                                         >  1:154532/1‑150 (MQ=255)       ttGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAAc                                                                                                                        <  2:689055/150‑1 (MQ=255)           gCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCgg                                                                                                                    <  1:15455/150‑1 (MQ=255)                     cTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGc                                                                                                          >  2:203831/1‑150 (MQ=255)                      ttGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCg                                                                                                         >  1:336427/1‑150 (MQ=255)                         tATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAAc                                                                                                      <  1:754103/150‑1 (MQ=255)                                            ccTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGaa                                                                                   <  2:656254/150‑1 (MQ=255)                                            ccTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGaa                                                                                   <  1:531177/150‑1 (MQ=255)                                            ccTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGaa                                                                                   <  2:165885/150‑1 (MQ=255)                                                    tCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGc                                                                           <  2:260542/150‑1 (MQ=255)                                                       aaTAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCggg                                                                        <  1:203831/150‑1 (MQ=255)                                                       aaTAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCggg                                                                        >  1:22894/1‑150 (MQ=255)                                                               cTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAAAAGCGTCTCCGGCTCGTCCtt                                                                >  2:125268/1‑150 (MQ=255)                                                                 cGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGa                                                              <  1:200590/150‑1 (MQ=255)                                                                         aCCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCAGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGc                                                      <  2:757924/150‑1 (MQ=255)                                                                          ccGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTAACCCAATACGGGTTTGGCGGCGAACGGCCCCAAGACCGCAAGAAGCAACTGCGGGGCGTTCTTTAGTTCCGGcc                                                     >  1:536186/1‑150 (MQ=255)                                                                              gACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAg                                                 >  1:6086/1‑150 (MQ=255)                                                                                           tCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGc                                    <  2:22894/150‑1 (MQ=255)                                                                                            ccTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGcagcatcattcaggatcgcatcggcgtcacggtcaaccccgaggcgctattcgacgttcaggt                                                                             <  1:458387‑M2/108‑64 (MQ=255)                                                                                            ccTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGcagcatcattcaggatcgcatcggcgtcacggtcaaccccgaggcgctattcgacgttcaggt                                                                             >  2:458387‑M2/1‑45 (MQ=255)                                                                                             cTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCAt                                  <  2:154532/150‑1 (MQ=255)                                                                                              tGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATg                                 >  1:745127/1‑150 (MQ=255)                                                                                              tGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATg                                 >  2:703175/1‑150 (MQ=255)                                                                                                 atgatgCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCg                              <  2:336427/150‑1 (MQ=255)                                                                                                    atgCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGcagcatcattcaggatcgcatcggcgtcacggtcaaccccgaggcgctattcgacgttcaggttaaacgtattcacgaatacaagcgccagttgctcaacctgatgcacaccg                           <  1:403450‑M2/150‑114 (MQ=255)                                                                                                      gCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAg                         >  1:422056/1‑150 (MQ=255)                                                                                                          gCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAGCTGa                     <  1:388286/150‑1 (MQ=255)                                                                                                                  gcgcTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAGCTGAGGGTTGGa             <  2:597974/150‑1 (MQ=255)                                                                                                                         cTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAGCTGAGGGTTGGACTGGTAc      <  1:703175/150‑1 (MQ=255)                                                                                                                         cTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAGCTGAGGGTTGGACTGGTAc      <  2:6086/150‑1 (MQ=255)                                                                                                                             gCAGCCGCTGGGcagcatcattcaggatcgcatcggcgtcacggtcaaccccgaggcgctattcgacgttcaggttaaacgtattcacgaatacaagcgccagttgctcaacctgatgcacaccgttgcactgtaccaggccatacgcaa  >  2:403450‑M2/1‑12 (MQ=255)                                                                                                                                        |                                                                                                                                           ATCAGGTTGAGCAACTGGCGCTTGTATTCGTGAATACGTTTAACCTGAACGTCGAATAGCGCCTCGGGGTTGACCGTGACGCCGATGCGATCCTGAATGATGCTGGCCAGGGCGCGCTTGCTGTGCAGCCGCTGGGCAGCGAACTGTTTGCGGAACCCGGGTTTGTCGGCGAACGGCACCAGGCCCGCCAGAAGCGTCTGCGGGTCGTCCTTGAGTTCCGGCCCAAGCGCCTCGACCAGCATGTCGGTCAGCTGAGGGTTGGACTGGTACAACC  >  NC_002947/5744221‑5744494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.