New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5897799 =	40 (1.350)	7 (0.300)	7/192	NT	22.2%	intergenic (‑143/+91)	PP_5172/PP_5173	hypothetical protein/RND family transporter
	?	NC_002947	5897875 =	18 (0.780)					intergenic (‑219/+15)	PP_5172/PP_5173	hypothetical protein/RND family transporter

ATGCTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCG  >  NC_002947/5897655‑5897942                                                                                                                                                 |                                                                                                                                                gtgttctggggccccatggcctacgccatgattggcgggatcatcgtggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTa                                                                                                                                            >  2:42227‑M1/145‑150 (MQ=255)  tGCTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAg                                                                                                                                           <  1:195011/150‑1 (MQ=255)  tGCTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAg                                                                                                                                           <  1:206373/150‑1 (MQ=255)   gCTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAgg                                                                                                                                          >  1:472916/1‑150 (MQ=255)    cTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTg                                                                                                                                               >  1:267309/1‑144 (MQ=255)    cTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTg                                                                                                                                               <  2:267309/144‑1 (MQ=255)        ttCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCgg                                                                                                                                     <  2:472916/150‑1 (MQ=255)        ggggccccatggcctacgccatgattggcgggatcatcgtggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCgg                                                                                                                                     <  1:449801‑M1/13‑1 (MQ=255)         gggccccatggcctacgccatgattggcgggatcatcgtggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCggg                                                                                                                                    <  2:511486‑M1/14‑1 (MQ=255)             cTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTa                                                                                                                                >  2:36858/1‑150 (MQ=255)             cTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTa                                                                                                                                >  1:752711/1‑150 (MQ=255)              ttGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAc                                                                                                                               >  1:92400/1‑150 (MQ=255)              ttGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAc                                                                                                                               <  1:631692/150‑1 (MQ=255)                atggcctacgccatgattggcgggatcatcgtggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTAccc                                                                                                                             >  2:450251‑M1/130‑150 (MQ=255)                  aGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCcgc                                                                                                                           >  1:479180/1‑150 (MQ=255)                         gcgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGTCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACg                                                                                                                    >  2:411154/1‑150 (MQ=255)                           gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggt                                                                                                                  >  2:424089/1‑150 (MQ=255)                            ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg                                                                                                                 <  1:424089/150‑1 (MQ=255)                               ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTc                                                                                                              <  2:92400/150‑1 (MQ=255)                                      gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCAc                                                                                                       >  1:511486/1‑150 (MQ=255)                                            tcgtggcgaccttgctgacgctgctgttcctgccggcgctgtacgtggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGc                                                                                                 >  2:349863‑M1/102‑150 (MQ=255)                                                gTTTTGCGCCTGCCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGCGTTTACTCGAGAATACGGCGGTCGCTGCAACATCGCATTc                                                                                             >  2:59938/1‑150 (MQ=255)                                                 ttttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTGTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcg                                                                                            >  1:454400/1‑150 (MQ=255)                                                    tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg                                                                                         <  2:230984/150‑1 (MQ=255)                                                     tctccTGACTTGATGTCAATATTAGTGACGCGGCATTATTCTTAAAAATCCTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCCCGAATACGGTGGTCGATGCACCATCGCATTCGCggg                                                                                        <  1:289738/147‑1 (MQ=255)                                                        ccTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTCTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaa                                                                                     >  2:792607/1‑150 (MQ=255)                                                            gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAccc                                                                                 >  1:620869/1‑150 (MQ=255)                                                                   ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCcgc                                                                                                                           >  2:701650/1‑101 (MQ=255)                                                                   ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCcgc                                                                                                                           <  1:701650/101‑1 (MQ=255)                                                                      aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTg                                                                                                                                               >  1:538192/1‑78 (MQ=255)                                                                      aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTg                                                                                                                                               <  2:538192/78‑1 (MQ=255)                                                                        tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg                                                                     <  1:36858/150‑1 (MQ=255)                                                                          gtagtGAGGCGGGATTTTTATTAAAAATACTTTGTAATAATTTTTATATAACCATTTAAGACAACGCACCTTTTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgggg                                                                   <  1:13921/150‑1 (MQ=37)                                                                           tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGc                                                                  <  2:454400/150‑1 (MQ=255)                                                                            agtGAGGCGGGATCATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg                                                                                                          >  2:323874/1‑109 (MQ=255)                                                                            agtGAGGCGGGATCATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATg                                                                                                          <  1:323874/109‑1 (MQ=255)                                                                             gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATGTAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg                                                                                                                 <  1:522457/101‑1 (MQ=255)                                                                             gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATGTAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACggtg                                                                                                                 >  2:522457/1‑101 (MQ=255)                                                                                aGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCcgc                                                                                                                           <  2:273223/88‑1 (MQ=255)                                                                                aGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCcgc                                                                                                                           >  1:273223/1‑88 (MQ=255)                                                                                       attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCtt                                                      >  1:281933/1‑150 (MQ=255)                                                                                         tggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc                                                                                           >  1:305439‑M1/57‑111 (MQ=255)                                                                                         tggcctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc                                                                                           <  2:305439‑M1/55‑1 (MQ=255)                                                                                            tCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc                                                 <  1:34929/150‑1 (MQ=255)                                                                                              ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg                                                                    >  2:390417/1‑129 (MQ=255)                                                                                              ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg                                                                    <  1:390417/129‑1 (MQ=255)                                                                                                      aCTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTATACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc                                       <  1:59938/150‑1 (MQ=255)                                                                                                          tttAAGAATTTTTATATAACCATTTAAGAAAAAACGCCACTGGGGGTAGCGAGGTGACCAACGAATACGATTGACCCTGAAGATGTTCAAGGACAGCTTAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCATGTTTCTGCGGCt                                   >  1:379730/1‑150 (MQ=255)                                                                                                                  tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc                           <  1:792607/150‑1 (MQ=255)                                                                                                                        acacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg                                                                                          <  1:37869‑M1/56‑1 (MQ=255)                                                                                                                        acacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg                                                                                          >  2:37869‑M1/26‑81 (MQ=255)                                                                                                                           aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg                  >  1:208517/1‑150 (MQ=255)                                                                                                                                    gcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc                     >  2:526357‑M1/14‑138 (MQ=255)                                                                                                                                    gcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc                     <  1:526357‑M1/125‑1 (MQ=255)                                                                                                                                           acGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCg  <  2:479180/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                ATGCTCGTTCTCCTTGGAGTGAGGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCG  >  NC_002947/5897655‑5897942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.