| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5897799 = | 40 (1.350) | 7 (0.300) | 7/192 | NT | 22.2% | intergenic (‑143/+91) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| ? | NC_002947 | 5897875 = | 18 (0.780) | intergenic (‑219/+15) | PP_5172/PP_5173 | hypothetical protein/RND family transporter | |||||
TAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACAC > NC_002947/5897726‑5898018 | tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 1:36858/150‑1 (MQ=255) gtagtGAGGCGGGATTTTTATTAAAAATACTTTGTAATAATTTTTATATAACCATTTAAGACAACGCACCTTTTGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgggg < 1:13921/150‑1 (MQ=37) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGc < 2:454400/150‑1 (MQ=255) attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCtt > 1:281933/1‑150 (MQ=255) tCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc < 1:34929/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg > 2:390417/1‑129 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg < 1:390417/129‑1 (MQ=255) gtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcctctggtaggagcgggtttacccgcgaatacggtggtcgatgcaccatcgcattcgcgggtaaacccgctcctaccagGGGCCATATGGGc > 2:526357‑M2/126‑138 (MQ=255) gtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcctctggtaggagcgggtttacccgcgaatacggtggtcgatgcaccatcgcattcgcgggtaaacccgctcctaccagGGGCCATATGGGc < 1:526357‑M2/13‑1 (MQ=255) aCTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTATACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGc < 1:59938/150‑1 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAAAAAACGCCACTGGGGGTAGCGAGGTGACCAACGAATACGATTGACCCTGAAGATGTTCAAGGACAGCTTAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCATG‑TTTCTGCGGCt > 1:379730/1‑150 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATc < 1:792607/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAg > 1:208517/1‑150 (MQ=255) gcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTAc < 1:526357‑M1/125‑1 (MQ=255) gcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTAc > 2:526357‑M1/14‑138 (MQ=255) acGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCg < 2:479180/150‑1 (MQ=255) GTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca > 1:456887‑M1/1‑140 (MQ=255) GTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 2:456887‑M1/140‑1 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGAGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:273458‑M1/1‑150 (MQ=255) cgcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCgtg‑t > 2:37869‑M2/57‑81 (MQ=255) cgcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCgtg‑t < 1:37869‑M2/25‑1 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGAATTCGCGCGTAAATCCGCGTCGATGATGGGCCATATGGGCCTTCACGCCTGCTTTCTCCAGCAC‑CGGAGTTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGACAGCAAGGTc > 1:779212/1‑150 (MQ=255) gcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCa < 2:305439‑M2/56‑1 (MQ=255) gcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCa > 1:305439‑M2/56‑111 (MQ=255) AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa < 2:449801‑M1/150‑1 (MQ=255) gcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga > 2:349863‑M2/50‑150 (MQ=255) tggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACCCGGCGCCATGGCCGGGTCGGGGGCGTCAGCAAGGTCGCCACgatgat > 2:606259/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:29241/1‑150 (MQ=255) gATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTa < 1:574948/88‑1 (MQ=255) gATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTa > 2:574948/1‑88 (MQ=255) gATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGc < 1:29241/150‑1 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTcgc < 2:302753/73‑1 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTcgc > 1:302753/1‑73 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 1:751228/97‑1 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa > 2:751228/1‑97 (MQ=255) cATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCAt < 2:620869/150‑1 (MQ=255) gggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCAt > 2:450251‑M2/22‑150 (MQ=255) cccgctcctaccagGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGccc < 2:511486‑M2/136‑1 (MQ=255) ccgctcctaccagGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGcccc < 1:449801‑M2/137‑1 (MQ=255) taccagGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAacac > 2:42227‑M2/7‑150 (MQ=255) | TAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTG‑TTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACAC > NC_002947/5897726‑5898018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |