New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6000471 =	41 (1.390)	4 (0.140)	4/236	NT	9.4%	coding (950/1428 nt)	PP_5256	cyclic nucleotide‑binding protein
	?	NC_002947	6000489 =	38 (1.340)					coding (968/1428 nt)	PP_5256	cyclic nucleotide‑binding protein

CTCGACTCTGGAGTCGGTGGAGTACGAGGCCAGCGGCTTCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGATCCTGGGGGTGGGCGAGCATTCC  >  NC_002947/6000322‑6000613                                                                                                                                                       |                                                                                                                                               cTCGACTCTGGAGTCGGTGGAGTACGAGGCCAGCGGCTTCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTgtcgcc                                                                                                                                                >  2:379787/1‑150 (MQ=255)    gACTCTGGAGTCGGTGGAGTACGAGGCCAGCGGCTTCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCcgcg                                                                                                                                             >  2:471544/1‑150 (MQ=255)             gTCGGTGGAGTACGAGGCCAGCGGCTTCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAgccgcga                                                                                                                                    >  2:778122/1‑148 (MQ=255)                   ggAGTACGAGGCCAGCGGCTTCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTCCCGCCGCGCAGCCGCCAGCGCGa                                                                                                                              >  2:403274/1‑150 (MQ=255)                           aGGCCAGCGGCTTAGCGCCCGATGCGGGCGCCAAGGGCGATGCACGTAACCACCTCTT‑TCCCCGGTACATCGCGCACCTGGAGGCCATCCTGGTGATGTGGAACGTCGACCTGGCCGTGTCGCCGCGCAGCCGCCAGCGCGAGGTGCTgg                                                                                                                      <  1:379787/150‑1 (MQ=255)                            ggCCAGCGGCTTCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGa                                                                                                                     <  1:329311/150‑1 (MQ=255)                               cAGCGGCTTCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGAAGGATGa                                                                                                                  >  2:220142/1‑150 (MQ=255)                                      ttCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTg                                                                                                                       >  1:177380/1‑138 (MQ=255)                                      ttCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTg                                                                                                                       <  2:177380/138‑1 (MQ=255)                                        cGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAgt                                                                                                         <  2:636533/150‑1 (MQ=255)                                          tGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCa                                                                                                                                    >  1:10305/1‑121 (MQ=255)                                          tGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCa                                                                                                                                    <  2:10305/121‑1 (MQ=255)                                            gCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGCGCGAGTGTTc                                                                                                     <  2:196288/150‑1 (MQ=255)                                                    gggCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCcgctcgct                                                                                             >  1:445250/1‑150 (MQ=255)                                                     ggCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGTCCGAGGTAGGTGCTGGATGAGGTGCGAGTGTTCcgctcgcta                                                                                            >  1:7805/1‑149 (MQ=255)                                                      gcgcCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGa                                                                                           <  1:22836/150‑1 (MQ=255)                                                        gcCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTCGACGAGGTGAGAGTGTTCAGCTCGCTGAGt                                                                                         <  2:71417/150‑1 (MQ=255)                                                           aaGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGAc                                                                                      >  2:117881/1‑150 (MQ=255)                                                              ggCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGaa                                                                                   >  2:51077/1‑150 (MQ=255)                                                                cGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAaga                                                                                 <  1:602189/150‑1 (MQ=255)                                                                         tAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGc                                                                        >  1:246775/1‑150 (MQ=255)                                                                           aCCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGt                                                                      >  1:595008/1‑150 (MQ=255)                                                                              aGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTCCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGa                                                                   <  2:754469/150‑1 (MQ=255)                                                                                   ttCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAg                                                                                                                 >  1:467637/1‑99 (MQ=255)                                                                                   ttCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAg                                                                                                                 <  2:467637/99‑1 (MQ=255)                                                                                    tCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAgc                                                             <  2:783447/150‑1 (MQ=255)                                                                                        ccTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCAt                                                         >  1:766138/1‑150 (MQ=255)                                                                                              gcACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGc                                                   >  2:746841/1‑150 (MQ=255)                                                                                               cACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCa                                                  <  2:595008/150‑1 (MQ=255)                                                                                                 ccG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGt                                                >  2:643632/1‑150 (MQ=255)                                                                                                       aCCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCcgc                                                                                                  >  1:257312/1‑95 (MQ=255)                                                                                                       aCCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCcgc                                                                                                  <  2:257312/95‑1 (MQ=255)                                                                                                                      gggTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAgg                            <  1:452172/150‑1 (MQ=255)                                                                                                                         tGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGa                         >  2:442012/1‑150 (MQ=255)                                                                                                                              tgGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAaga                                                                                 >  2:693645/1‑89 (MQ=255)                                                                                                                              tgGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAaga                                                                                 <  1:693645/89‑1 (MQ=255)                                                                                                                                 aaCGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGATCCTgggg                 <  2:445250/150‑1 (MQ=255)                                                                                                                                    gTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGATCCTggg                  <  2:197471/146‑1 (MQ=255)                                                                                                                                    gTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGATCCTggg                  >  1:197471/1‑146 (MQ=255)                                                                                                                                     tCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGATCCTGGGGGTgg             <  1:442012/150‑1 (MQ=255)                                                                                                                                         ccTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGATCCTGGGGGTGGGCGa         <  1:643632/150‑1 (MQ=255)                                                                                                                                           tGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGACGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACATGGCGGACCAGGTGATCCTGGGGGTGGGCGAGc       >  2:52514/1‑150 (MQ=255)                                                                                                                                                gTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGATCCTGGGGGTGGGCGAGCATTcc  <  1:117881/150‑1 (MQ=255)                                                                                                                                                agcacctCGCGCTGGCGGCTGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCg                                                                       >  1:351359‑M1/8‑81 (MQ=255)                                                                                                                                                agcacctCGCGCTGGCGGCTGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCg                                                                       <  2:351359‑M1/74‑1 (MQ=255)                                                                                                                                                 gcacctCGCGCTGGCGGCTGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGAc                                                                                      <  1:190820‑M1/59‑1 (MQ=255)                                                                                                                                                 gcacctCGCGCTGGCGGCTGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGAc                                                                                      >  2:190820‑M1/7‑65 (MQ=255)                                                                                                                                                       |                                                                                                                                               CTCGACTCTGGAGTCGGTGGAGTACGAGGCCAGCGGCTTCGTGGCCGATGCGGGCGCCAAGGGCGATGCACGTAACCAGCTGTTCGACCTGGCGCACCG‑GCACCTGGAGGCCAGCGGGGTGATGTGGAACGTCGACCTGGCCGTGCCGCCGCGCAGCCGCCAGCGCGAGGTGCTGGATGAGGTGCGAGTGTTCCGCTCGCTGAGTGACGAAGAGCGCGATGCGTTGAGCCAGCGCATGACTGCAGTCGAGTACCTGGCGGACCAGGTGATCCTGGGGGTGGGCGAGCATTCC  >  NC_002947/6000322‑6000613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.