New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6119391	35 (1.180)	4 (0.140)	4/242	NT	10.7%	intergenic (‑308/+91)	PP_5368/PP_5370	MFS transporter/oxidoreductase‑like protein
	?	NC_002947	= 6119409	32 (1.100)					intergenic (‑326/+73)	PP_5368/PP_5370	MFS transporter/oxidoreductase‑like protein

GCCGTTGGCCTGGAGTTCAAAACAGCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCG  >  NC_002947/6119246‑6119523                                                                                                                                                  |                                                                                                                                     gCCGTTGGCCTGGAGTTCAAAAAAGCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGgc                                                                                                                                  <  2:76569/150‑1 (MQ=255)    gTTGGCCTGGAGTTCAAAACAGCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGcgcc                                                                                                                               >  1:463197/1‑150 (MQ=255)         ccTGGAGCTCAAAACATCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTAAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAg                                                                                                                          >  2:281305/1‑150 (MQ=255)             gAGTTCAAAACAGCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAggcgg                                                                                                                      <  1:166423/150‑1 (MQ=255)             gAGTTCAAAACAGCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAggcgg                                                                                                                      <  1:580801/150‑1 (MQ=255)                       cAGCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCgg                                                                                                            <  2:463197/150‑1 (MQ=255)                         gCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTg                                                                                                          >  1:528825/1‑150 (MQ=255)                            cTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGAc                                                                                                       >  1:475427/1‑150 (MQ=255)                                   aCAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTcc                                                                                                <  2:375088/150‑1 (MQ=255)                                          tCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTcc                                                                                         >  1:88669/1‑150 (MQ=255)                                             cTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCggt                                                                                      <  2:475427/150‑1 (MQ=255)                                              ttCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCggtg                                                                                     >  1:671975/1‑150 (MQ=255)                                                 gTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAACGTCCAGGTTCCGGTGGTc                                                                                  <  1:281305/150‑1 (MQ=255)                                                    aTAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGAc                                                                               <  1:712387/150‑1 (MQ=255)                                                    aTAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGAc                                                                               >  2:774527/1‑150 (MQ=255)                                                    aTAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGAc                                                                               <  2:199441/150‑1 (MQ=255)                                                    aTAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGAc                                                                               >  1:173473/1‑150 (MQ=255)                                                          cACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACg                                                                         >  1:30640/1‑150 (MQ=255)                                                          cACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACg                                                                         >  2:126838/1‑150 (MQ=255)                                                                  aGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGc                                                                 >  1:109497/1‑150 (MQ=255)                                                                  aGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGc                                                                 >  1:449136/1‑150 (MQ=255)                                                                      cACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGggccgcctggcggcgcctcggtagcg                                                                                                            >  1:793165‑M1/1‑77 (MQ=255)                                                                      cACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCAGTACTGACAGCACGCGCTACCGggccgcctggcggcgcctcggtagcg                                                                                                            <  2:793165‑M1/103‑27 (MQ=255)                                                                        cTTCAGCACCTTCCCAGCGGGCAAAGCCGATCACCCGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTc                                                           <  2:528825/150‑1 (MQ=255)                                                                                       aGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCt                                                       >  2:495281/1‑139 (MQ=255)                                                                                       aGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCt                                                       <  1:495281/139‑1 (MQ=255)                                                                                            gCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATa                                       <  1:630695/150‑1 (MQ=255)                                                                                                    gATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTc                               <  2:671975/150‑1 (MQ=255)                                                                                                         ccAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGggccgcctggcggcgcctcggt                                                                                                                <  2:264809‑M1/64‑23 (MQ=255)                                                                                                         ccAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGggccgcctggcggcgcctcggt                                                                                                                >  1:264809‑M1/1‑42 (MQ=255)                                                                                                         ccAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACt                          >  1:286982/1‑150 (MQ=255)                                                                                                            ggTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACTGtt                       <  2:286982/150‑1 (MQ=255)                                                                                                              ttGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACACACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACTGTTGa                     >  1:552602/1‑150 (MQ=255)                                                                                                                  gCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTAc                           <  1:701134/140‑1 (MQ=255)                                                                                                                  gCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTAc                           >  2:701134/1‑140 (MQ=255)                                                                                                                    accacCTCATTACTGACAGCACGCGCGACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACTGTTGAACGCgg               <  2:173473/148‑1 (MQ=255)                                                                                                                          tCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACt                          <  2:480345/133‑1 (MQ=255)                                                                                                                          tCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACt                          >  1:480345/1‑133 (MQ=255)                                                                                                                          tCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACTGTTGAACGCGGCCCAGc         >  2:293169/1‑150 (MQ=255)                                                                                                                                 tGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCg  >  1:102666/1‑150 (MQ=255)                                                                                                                                           cgcTACCGAGGCGCCGCCAGGCGGCCcggtagcgcgtgctgtcagtactgaggtgtcgcccaacctgggtatcggctttgcccgctgggaaggtgctgaagtg                                       <  2:793165‑M2/103‑78 (MQ=255)                                                                                                                                           cgcTACCGAGGCGCCGCCAGGCGGCCcggtagcgcgtgctgtcagtaatgaggtgtcgcccaacctgggtatcggctttgcccgctgggaaggtgctgaagtg                                       >  1:793165‑M2/1‑26 (MQ=255)                                                                                                                                               aCCGAGGCGCCGCCAGGCGGCCcggtagcgcgtgctgtcagtaatgaggtgtcgcccaacctgg                                                                          <  2:264809‑M2/64‑43 (MQ=255)                                                                                                                                               aCCGAGGCGCCGCCAGGCGGCCcggtagcgcgtgctgtcagtaatgaggtgtcgcccaacctgg                                                                          >  1:264809‑M2/1‑22 (MQ=255)                                                                                                                                                  |                                                                                                                                     GCCGTTGGCCTGGAGTTCAAAACAGCCCTCAATGACAAAAATCACTTCGTCATAGAGCACCGTCCAGGCCACTTCAGCACCTTCCCAGCGGGCAAAGCCGATACCCAGGTTGGGCGACACCTCATTACTGACAGCACGCGCTACCGAGGCGCCGCCAGGCGGCCCGCCCCGGTGGACAAAGTCCAGGTTCCGGTGGTCGACCAGACGCACCGGGCCTTTTCCGCTGAGTGTGCGGGTCATACTTCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCG  >  NC_002947/6119246‑6119523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.