New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1399029 =	31 (1.050)	4 (0.140)	4/240	NT	13.1%	coding (856/1302 nt)	tolB	Tol biopolymer transport system protein
	?	NC_002947	1399052 =	23 (0.800)					coding (879/1302 nt)	tolB	Tol biopolymer transport system protein

GGCCTGAACGGTGCGCCAGCCTGGTCGCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAGCGCGTAACGTTCGTAGGTAACTACAACGCCAACCCGAAACTTTCGGCGGA  >  NC_002947/1398903‑1399198                                                                                                                                                      |                                                                                                                                                   ggCCTGAACGGTGCGCCAGCCTGGTCGCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCg                                                                                                                                                    >  1:11978/1‑150 (MQ=255)  ccgatctcGGTGCGCCAGCCTGGTCGCCGGACGGTTCGCGCCTGGCGTCTGGACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGt                                                                                                                                                   <  1:250675/143‑1 (MQ=255)    cTGAACGGTGCGCCAGCCTGGTCGCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCCATACCGAGCCGTTc                                                                                                                                                 >  2:259115/1‑150 (MQ=255)         cGGTGCGCCAGCCTGGTCGCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACTGGATGAACGTGGCCTAGCGCCAGGTCAGCGTTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTgggg                                                                                                                                            >  1:179097/1‑150 (MQ=255)          ggTGCGCCAGCCTGGTTGCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGAGGGCAACCCGGACATCTACGTGATGAACGTGGTCTCGCGACAGATCAGTCGTGTTATTGCAGGCCCGGGTATTAATACCGAGCCGttagatcgg                                                                                                                                           >  2:250675/1‑143 (MQ=255)             gcgcCAGCCTGGTCGCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTATGTGTTGAACGTGGCCTCGCGCCAGGTCCGAACTGCTTCTGCAGGCCCGGGTATCAAGACCGGGCCGTTCTGGGGTaaa                                                                                                                                        <  2:752022/150‑1 (MQ=255)                     cTGGTCGCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCaa                                                                                                                                >  2:204619/1‑150 (MQ=255)                           gCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCct                                                                                                                          >  2:293609/1‑150 (MQ=255)                            ccGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCctc                                                                                                                         <  1:293609/150‑1 (MQ=255)                            ccGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGAGCTAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCctc                                                                                                                         <  2:352728/150‑1 (MQ=255)                                                         gTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAAcc                                                                                            >  2:132360/1‑150 (MQ=255)                                                            cAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCa                                                                                         <  1:204619/150‑1 (MQ=255)                                                             aaGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAg                                                                                        <  2:179097/150‑1 (MQ=255)                                                               gatctgcggtttgccgccacggtcggaagtgaagtagagggtgttgccatctttaccccagaacGGCCCGGGTATCAATACCGAGCCGTTCTg                                                                                                                                               <  1:339604‑M1/29‑1 (MQ=255)                                                               gatctgcggtttgccgccacggtcggaagtgaagtagagggtgttgccatctttaccccagaacGGCCCGGGTATCAATACCGAGCCGTTCTg                                                                                                                                               >  2:339604‑M1/65‑93 (MQ=255)                                                                      aaCCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATaaa                                                                               <  1:158442/150‑1 (MQ=255)                                                                       aCCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAAc                                                                              <  1:132360/150‑1 (MQ=255)                                                                         ccGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAg                                                                            >  1:25636/1‑150 (MQ=255)                                                                            gACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCg                                                                         <  2:25636/150‑1 (MQ=255)                                                                                  tACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAgt                                                                   >  2:598087/1‑150 (MQ=255)                                                                                   aCGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAgtg                                                                  <  2:11978/150‑1 (MQ=255)                                                                                          gaACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAgtggtggtgg                                                           >  1:702022/1‑150 (MQ=255)                                                                                                   cTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCCACACCCTCTACTTCACTTCCGACAGTGGGGCTTAACCTTGAACCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAgcg                                                  >  1:776397/1‑150 (MQ=255)                                                                                                   cTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAgcg                                                  >  2:645410/1‑150 (MQ=255)                                                                                                         ccAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAGCGCGTAAc                                            >  2:11947/1‑150 (MQ=255)                                                                                                                  ccGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAGCGCGTAACGTTCGTAgg                                   <  1:645410/150‑1 (MQ=255)                                                                                                                    gtgtTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAGCGCGTAACGTTCGTAGGTa                                 <  1:11947/150‑1 (MQ=255)                                                                                                                         cagaacggctcggtattgatacccgggccGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATc                                                                                     >  2:339604‑M2/30‑93 (MQ=255)                                                                                                                         cagaacggctcggtattgatacccgggccGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATc                                                                                     <  1:339604‑M2/64‑1 (MQ=255)                                                                                                                                gctcggtattgatacccgggccGTTCTGGGGTAAAGATGGCAACACCCTCTa                                                                                                                       <  2:32643‑M2/30‑1 (MQ=255)                                                                                                                                gctcggtattgatacccgggccGTTCTGGGGTAAAGATGGCAACACCCTCTa                                                                                                                       >  1:32643‑M2/23‑52 (MQ=255)                                                                                                                                 CCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAGCGCGTAACGTTCGTAGGTAACTACAACGCCaa                    >  2:702022‑M1/1‑150 (MQ=255)                                                                                                                                        aTCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGAt                                                                                      >  1:670156/1‑77 (MQ=255)                                                                                                                                        aTCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGAt                                                                                      <  2:670156/77‑1 (MQ=255)                                                                                                                                              aCCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGc                                                                                          <  2:227605/67‑1 (MQ=255)                                                                                                                                              aCCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGc                                                                                          >  1:227605/1‑67 (MQ=255)                                                                                                                                                 gAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAGCGCGTAACGTTCGTAGGTAACTACAACGCCAACCCGAAACTTTcggcg    >  2:256865/1‑150 (MQ=255)                                                                                                                                                   gccGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAGCGCGTAACGTTCGTAGGTAACTACAACGCCAACCCGAAACTTTCGGCGGa  <  1:259115‑M2/147‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GGCCTGAACGGTGCGCCAGCCTGGTCGCCGGACGGTTCGCGCCTGGCGTTCGTACTGTCCAAGGACGGCAACCCGGACATCTACGTGATGAACGTGGCCTCGCGCCAGATCAGCCGTGTTACTGCAGGCCCGGGTATCAATACCGAGCCGTTCTGGGGTAAAGATGGCAACACCCTCTACTTCACTTCCGACCGTGGCGGCAAACCGCAGATCTATAAACAGTCGGTCAGTGGTGGTGGTGCCGAGCGCGTAACGTTCGTAGGTAACTACAACGCCAACCCGAAACTTTCGGCGGA  >  NC_002947/1398903‑1399198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.