New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1559279	29 (0.980)	4 (0.140)	4/230	NT	12.3%	coding (811/1122 nt)	PP_1370	group 1 family glycosyl transferase
	?	NC_002947	= 1559297	30 (1.090)					coding (793/1122 nt)	PP_1370	group 1 family glycosyl transferase

GGCGTGCACAGGCGGCCACACTGTTCGTTGATGATTTCAGGGAACGCAC‑CGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAGGGGTCGCCAAGTTGCTGCATGCAGTCAAGCAG  >  NC_002947/1559152‑1559438                                                                                                                                                   |                                                                                                                                              ggCGTGCACAGGCGGCCACACTGTTCGTTGATGATTTCAGGGAACGCAC‑CGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCgctg                                                                                                                                           >  1:19735‑M2/1‑146 (MQ=255)             cggcCACACTGTTCGTTGATGATTTCAGGGAACGCAC‑CGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCgg                                                                                                                               <  2:637370/150‑1 (MQ=255)                           gTTGATGATTTCAGGGAACGCAC‑CGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCg                                                                                                                                <  2:277993/135‑1 (MQ=255)                           gTTGATGATTTCAGGGAACGCAC‑CGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCg                                                                                                                                >  1:277993/1‑135 (MQ=255)                            ttGATGATTTCAGGGAACGCAC‑CGGCGCGCACGGCCACAACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGAACAGGCCGAATGTTTCCTGGTCCCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGcc                                                                                                                >  1:246361/1‑150 (MQ=255)                            tggatgatTTCAGGGAACGCACGCGGAG‑GCGCGGCCCCCACGGGGGTGGCGCTGGGCATGGCTTCGAGAATGACCAGGCCGAATCTTGCCCGGTCGCCAGCATGCACCGCGAAGTCGGCGCTTGCGATCATCCTGGGCACCGCTGCAGcc                                                                                                                <  2:50417/148‑1 (MQ=255)                                   tttCAGGGAACGCAC‑CGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGa                                                                                                         >  2:787572/1‑150 (MQ=255)                                   tttCAGGGAACGCAC‑CGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGa                                                                                                         >  2:597361/1‑150 (MQ=255)                                                 c‑cGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGNCGATCANCCGGGCCACCTCNGCAGCCGGGCAGAAGTGATCAATGACg                                                                                           <  1:674616/150‑1 (MQ=255)                                                 c‑cGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACg                                                                                           >  1:597524/1‑150 (MQ=255)                                                               ccaccaCGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCg                                                                              >  2:395839/1‑150 (MQ=255)                                                               ccaccaCGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCg                                                                              >  2:286160/1‑150 (MQ=255)                                                               ccaccaCGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCg                                                                              >  2:348676/1‑150 (MQ=255)                                                                 accacGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGc                                                                            >  1:214423/1‑150 (MQ=255)                                                                       ggggTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTg                                                                      <  2:383664/150‑1 (MQ=255)                                                                          gTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGcc                                                                   <  1:571713/150‑1 (MQ=255)                                                                               gcTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCAt                                                              >  1:397612/1‑150 (MQ=255)                                                                                      aTGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAg                                                       >  2:169655/1‑150 (MQ=255)                                                                                           ttCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCgctggcgaccaggaaacattcggcctggtcattctcgaagccatggccagcgccacccccgtggtggccgtgcgcgccggtgcgttccctgaa                                                  <  2:539674‑M2/150‑94 (MQ=255)                                                                                           ttCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCccac                                                  >  1:692245/1‑150 (MQ=255)                                                                                                gaATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTa                                             >  1:664826/1‑150 (MQ=255)                                                                                                   tGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCgctggcgaccaggaaacattcggcctggtcattctcgaagccatggccagcgccacccccgtggtggccgtgcgcgccggtgcgttccctgaaatcatcaa                                          >  1:539674‑M2/1‑49 (MQ=255)                                                                                                             gAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAggg                                >  1:608166/1‑150 (MQ=255)                                                                                                             gAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCAAGCTTTCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAggg                                >  1:7190/1‑150 (MQ=255)                                                                                                                     ccTGGTCGCCAGCATGCACCAGCAAGTCGGCgctggcgaccaggaaacattcggcctggtcattctcgaagccatggccagcgccacccccgtggtggccgtgcgcgccggtgcgttccctgaaatcatcaacgaacagtgtggccgcct                        <  1:429910‑M2/150‑120 (MQ=255)                                                                                                                     ccTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAGGGGTCGCCaa                        <  1:395839/150‑1 (MQ=255)                                                                                                                       tGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAGGGGTAGCCACGt                      >  2:245903/1‑150 (MQ=255)                                                                                                                          tCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAGGGGTCGCCAAGTtgc                   <  2:664826/150‑1 (MQ=255)                                                                                                                               aGCATGCACCAGCAAGTCGGCGCTGGCGACCAGTCGGGCCACGTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAGGGGTCGCCAAGTTGCtgcat              <  2:188702/150‑1 (MQ=255)                                                                                                                                     cACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCg                                                                              <  2:477620/80‑1 (MQ=255)                                                                                                                                     cACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCg                                                                              >  1:477620/1‑80 (MQ=255)                                                                                                                                       ccAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAGGGGTCGCCAAGTTGCTGCATGCAGTCaa      <  2:397612/150‑1 (MQ=255)                                                                                                                                          gCAGGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGTACGCTGGCCGGCATGTTCGCTGCTTCACGTATTCCTTCTTACGTCTCTCCAAGTTGCTGCATGCAGTCAagca   <  1:100095/150‑1 (MQ=255)                                                                                                                                          gCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAGGGGTCGCCAAGTTGCTGCATGCAGTCAagca   >  1:173723/1‑150 (MQ=255)                                                                                                                                           cAAGTCGGCgctggcgaccaggaaacattcggcctggtcattctcgaagccatggccagcgccacccccgtggtggccgtgcgcgccggtgcgttccctgaaatcatcaacgaacagtgtggccgcctgtgcacgcccaacgatggccgg  >  2:429910‑M2/1‑9 (MQ=255)                                                                                                                                                   |                                                                                                                                              GGCGTGCACAGGCGGCCACACTGTTCGTTGATGATTTCAGGGAACGCAC‑CGGCGCGCACGGCCACCACGGGGGTGGCGCTGGCCATGGCTTCGAGAATGACCAGGCCGAATGTTTCCTGGTCGCCAGCATGCACCAGCAAGTCGGCGCTGGCGATCAGCCGGGCCACCTCTGCAGCCGGGCAGAAGTGATCAATGACGCTGACGTTGTGCGGCACGCTGGCCGGCATGTTCGAGCCCACCAGTAACAGGTGGTAGGGGTCGCCAAGTTGCTGCATGCAGTCAAGCAG  >  NC_002947/1559152‑1559438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.