New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1657084	19 (0.640)	4 (0.140)	4/230	NT	15.8%	coding (1452/1698 nt)	PP_1450	TPS family activation/secretion protein
	?	NC_002947	= 1657107	25 (0.910)					coding (1429/1698 nt)	PP_1450	TPS family activation/secretion protein

CCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTGCCG  >  NC_002947/1656976‑1657253                                                                                                                                    |                                                                                                                                                   cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGa                                                                                                                                  >  2:416279/1‑150 (MQ=255) cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGa                                                                                                                                  <  1:740468/150‑1 (MQ=255) cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGa                                                                                                                                  <  1:726425/150‑1 (MQ=255)     gCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTGCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTaa                                                                                                                              <  1:60199/150‑1 (MQ=255)     gCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGAGACTGGCTGAAAGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTaa                                                                                                                              <  1:416279/150‑1 (MQ=255)       cAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgt                                                                                                                            <  2:756997/150‑1 (MQ=255)        aGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgtg                                                                                                                           >  1:195763/1‑150 (MQ=255)               tttaCGCTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGAc                                                                                                                    <  1:532277/147‑1 (MQ=255)                               ggcggTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGc                                                                                                    <  2:94259/150‑1 (MQ=255)                                          cccagcccagGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGACCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGc                                                                                         <  1:75020/150‑1 (MQ=255)                                             agcccagGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGa                                                                                      <  1:598475/150‑1 (MQ=255)                                                          gCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTc                                                                         <  2:99617/150‑1 (MQ=255)                                                            cGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGAcc                                                                                    >  1:494224/1‑137 (MQ=255)                                                            cGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGAcc                                                                                    <  2:494224/137‑1 (MQ=255)                                                                      gCGTATCTCGGAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGCGTAAGTGTGCAGACGAAAGCCGCGGCCAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGgcaggcag                                                             >  2:475331/1‑150 (MQ=255)                                                                                            cAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATg                                       >  1:431899/1‑150 (MQ=255)                                                                                                           gcCTGGCTGAACGTATTGCGCCAGACggcgctgccacggacctgggccccacctttcgagatacgcccctacatcggcctggacctgggctgggttcgcaccgccgaaggcaaaccgtcacagcgcct                                              >  1:441695‑M2/1‑26 (MQ=255)                                                                                                           gcCTGGCTGAACGTATTGCGCCAGACggcgctgccacggacctgggccccacctttcgagatacgcccctacatcggcctggacctgggctgggttcgcaccgccgaaggcaaaccgtcacagcgcct                                              <  2:441695‑M2/128‑103 (MQ=255)                                                                                                           gcCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGc                        >  1:236104/1‑150 (MQ=255)                                                                                                            ccTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCgg                                                          <  2:37036/115‑1 (MQ=255)                                                                                                            ccTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCgg                                                          >  1:37036/1‑115 (MQ=255)                                                                                                              tGGCTGAACGTATTGCGCCAGACggcgctgccacggacctgggccccac                                                                                                                          >  1:423594‑M2/1‑23 (MQ=255)                                                                                                              tGGCTGAACGTATTGCGCCAGACggcgctgccacggacctgggccccac                                                                                                                          <  2:423594‑M2/49‑27 (MQ=255)                                                                                                               ggCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAgc                    <  2:168678/150‑1 (MQ=255)                                                                                                                gCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCgg                                                          >  2:528800/1‑111 (MQ=255)                                                                                                                gCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCgg                                                          <  1:528800/111‑1 (MQ=255)                                                                                                                  tGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGcc                 >  1:790982/1‑150 (MQ=255)                                                                                                                              gcCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCTGCGGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTg     >  1:179023/1‑150 (MQ=255)                                                                                                                              gcCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCCGCGGGTCCCGGATGTCCTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTg     >  2:87127/1‑150 (MQ=255)                                                                                                                                 aGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTGCCg  <  2:462575/150‑1 (MQ=255)                                                                                                                                    |                                                                                                                                                   CCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCAGCAGCTGTTCGACGGCAGGCAGCGGGTCACGGCTGTACTGCATGGCCAGCTCGCTCTGCCAGCGCCAAGGGCTGGGTGCCG  >  NC_002947/1656976‑1657253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.