New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2839511 =	17 (0.580)	4 (0.140)	4/236	NT	18.9%	coding (55/825 nt)	ecd	flavoprotein
	?	NC_002947	2839537 =	18 (0.640)					coding (29/825 nt)	ecd	flavoprotein

GGGCCGCCGCGATCGCCCAGCTCAGCATCTGCTCATCCACAGGAAGATCGCTGTAGGCACGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCACGCGTGTCAGTTAGGTGATGTGTCGGTGCCTTCGATTAGAAAAACTCGGTACTCC  >  NC_002947/2839394‑2839683                                                                                                                                                |                                                                                                                                                   gggCCGCCGCGATCGCCCAGCTCAGCATCTGCTCATCCACAGGAAGATCGCTGTAGGCACGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGa                                                                                                                                              <  2:109356/150‑1 (MQ=255) gggCCGCCGCGATCGCCCAGCTCAGCATCTGCTCATCCACAGGAAGATCGCTGTAGGCACGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTCGa                                                                                                                                              <  1:796770/150‑1 (MQ=255)  ggCCGCCGCGATCGCCCAGCTCAGCATCTGCTCATCCACAGGAAGATCGCTGTAGGCACGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAg                                                                                                                                             >  1:276302/1‑150 (MQ=255)           cctaactgacacgcgtgcacaagtcgttatgagcgtatatctcggcttgtgcatgtcattgcactggaacaatccatcatgagccttcaagacgaagcactcaaagcCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTc                                                                                                                                    <  1:150189‑M1/43‑1 (MQ=255)            aTCGCCCAGCTCAGCATCTGCTCATCCACAGGAAGATCGCTGTAGGCACGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCt                                                                                                                                   >  1:317198/1‑150 (MQ=255)                cccAGCTCAGCATCTGCTCATCCACAGGAAGATCGCTGTAGGCACGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGaa                                                                                                                               <  2:317198/150‑1 (MQ=255)                 tgacacgcgtgcacaagtcgttatgagcgtatatctcggcttgtgcatgtcattgcactggaacaatccatcatgagccttcaagacgaagcactcaaagcctggctcgccataacgggcttgccagGCTTTGAGTGCTTCGTCTTGAAg                                                                                                                              <  2:150189‑M2/23‑1 (MQ=255)                 ccAGCTCAGCATCTGCTCAAACACAGGAAGATCGCTGTAGGCACGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAg                                                                                                                              >  2:32121/1‑150 (MQ=255)                                                          cagggaCTGATCGATGCTGAAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGcc                                                                                     <  2:366656/145‑1 (MQ=255)                                                            cGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCga                                                                                   <  1:32121/150‑1 (MQ=255)                                                            cGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCga                                                                                   <  2:276302/150‑1 (MQ=255)                                                                              aaCATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGa                                                                 <  2:314254/150‑1 (MQ=255)                                                                               aCATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTTAGTGCTTCGTCTTGAAGGCTCATGGTGGCTTGTTCCCGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACgcc                                                                >  1:430400/1‑148 (MQ=255)                                                                               aCATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGAc                                                                <  2:765775/150‑1 (MQ=255)                                                                               aCATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGAc                                                                <  1:344073/150‑1 (MQ=255)                                                                                      atcatgagccttcaagacgaagcactcaaagcCTGGCTCGCCATAACGGGCTTGCCAGGCttt                                                                                                                                                <  1:658746‑M1/31‑1 (MQ=255)                                                                                      atcatgagccttcaagacgaagcactcaaagcCTGGCTCGCCATAACGGGCTTGCCAGGCttt                                                                                                                                                >  2:658746‑M1/33‑63 (MQ=255)                                                                                         gATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCAcgc                                                      >  2:659198/1‑150 (MQ=255)                                                                                             aCGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCCTGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCACGCgtgt                                                  <  1:495972/150‑1 (MQ=255)                                                                                               cttcaagacgaagcactcaaagcCTGGCAAGCCCGTTATGGCGAGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCACGCGTGTCa                                                <  2:150189‑M1/127‑1 (MQ=255)                                                                                                     gacgaagcactcaaagcctggcaagcccgttatggcgagccagGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCACGCGTGTCAGTTAgg                                          <  1:150189‑M2/107‑1 (MQ=255)                                                                                                                 aaagcctggcaagcccgttatggcgagccagGCTTTGAGTGCTTCGTCTTGAAGGCTCatgat                                                                                                                     <  1:658746‑M2/32‑1 (MQ=255)                                                                                                                 aaagcctggcaagcccgttatggcgagccagGCTTTGAGTGCTTCGTCTTGAAGGCTCatgat                                                                                                                     >  2:658746‑M2/32‑63 (MQ=255)                                                                                                                            cGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCACGCGTGTCAGTTAGGTGATGTGTCGGTGCCTTCGATTa                   <  1:659198/150‑1 (MQ=255)                                                                                                                               cATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCAc                                                        <  1:673210/110‑1 (MQ=255)                                                                                                                               cATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCAc                                                        >  2:673210/1‑110 (MQ=255)                                                                                                                                        cTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCGCGCGTGTCAGTTAGGTGATGTGTCGGTGCCTTCGATTa                   <  2:459223/138‑1 (MQ=255)                                                                                                                                        cTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCACGCGTGTCAGTTAGGTGATGTGTCGGTGCCTTCGATTa                   >  1:459223/1‑138 (MQ=255)                                                                                                                                             cagGCTTTGAGTGCTTCGTCTTGAAGGCTAATGATGGATTGTTCAAGTGGAAGGAGATTCACAAGCCGAGATATACGCTCATAACGACTTGTGCAAGCGTGTCAGTTAGGTGATGTGTCGGTGCCTTCGATTAGAAAAACTCGGTACTcc  <  2:20884‑M2/147‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   GGGCCGCCGCGATCGCCCAGCTCAGCATCTGCTCATCCACAGGAAGATCGCTGTAGGCACGTACTGATCGATGCTGCAACATCTGCGCGATCACGGTGTCGGCAGCAGGTAAGTTAGCTGGCTCGCCATAACGGGCTTGCCAGGCTTTGAGTGCTTCGTCTTGAAGGCTCATGATGGATTGTTCCAGTGCAATGACATGCACAAGCCGAGATATACGCTCATAACGACTTGTGCACGCGTGTCAGTTAGGTGATGTGTCGGTGCCTTCGATTAGAAAAACTCGGTACTCC  >  NC_002947/2839394‑2839683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.