| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4037820 = | 20 (0.680) | 5 (0.180) | 4/236 | NT | 20.3% | coding (588/1017 nt) | PP_3558 | amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4037840 = | 20 (0.710) | coding (608/1017 nt) | PP_3558 | amino acid ABC transporter substrate‑binding protein | |||||
AATCGCCCGGTAAAGGGCGTTTTCTCAACAGCCCAAGCGGCTGGACGTCTGAAACCGTCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATGGGGCGCTACAAGCTCATCCGGCTGGAAGAACCCCCGTTCGATGCCCAGGCCTGGGCCACCCTCACCGACCCCGCCAAC > NC_002947/4037699‑4037985 | caggcctgggcatcgaacgggggttcttccagccggatgagcttgtagcgccccatcagcggggtcgggttccagtagtagaacagcacaggtttgccgcgccggattgccgaaccgatctCGGCGCCGCGATGGACGCCGAGATCGGtt > 1:132395‑M1/122‑150 (MQ=255) cAACAGCCCAAGCGGCTGGACGTCTGAAACCGTCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCgg > 1:586162/1‑128 (MQ=255) cAACAGCCCAAGCGGCTGGACGTCTGAAACCGTCAACAGCCAAAAGCTAAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCgg < 2:586162/128‑1 (MQ=255) aaCAGCCCAAGCGGCTGGACGTCTGAAACCGTCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGCGGCTCCGGCGCCGCGATGGACGCCGAGATCGGGTCGGCAATCCGGCGCGGCAAACCtgtg > 1:599187/1‑150 (MQ=255) catcagcggggtcgggttccagtagtagaacagcacaggtttgccgcgccggattgccgaaccgatctCGGCGCCGCGATGGACGCCGAGATCg > 1:121792‑M1/69‑94 (MQ=255) catcagcggggtcgggttccagtagtagaacagcacaggtttgccgcgccggattgccgaaccgatctCGGCGCCGCGATGGACGCCGAGATCg < 2:121792‑M1/26‑1 (MQ=255) aCCGTCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCg > 2:650710/1‑150 (MQ=255) ccGTCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCt > 2:384055/1‑119 (MQ=255) ccGTCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCt < 1:384055/119‑1 (MQ=255) ccGTCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTACCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGc < 1:595004/150‑1 (MQ=255) tCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGc > 2:666057/1‑120 (MQ=255) tCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGc < 1:666057/120‑1 (MQ=255) tcgggttccagtagtagaacagcacaggtttgccgcgccggattgccgaaccgatctCGGCGCCGCGATGGACGCCGAGATCg > 1:546027‑M1/58‑83 (MQ=255) tcgggttccagtagtagaacagcacaggtttgccgcgccggattgccgaaccgatctCGGCGCCGCGATGGACGCCGAGATCg < 2:546027‑M1/26‑1 (MQ=255) gcgtaaGGCCTAGGGCCTTGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGAGGGACGCCGAGATCGGTTCTGCAATCCGGCGCGGCAAACCTGANCTGTTCTACTAATGGAACCCGACCCCGCTGATGGGGCGCTACaa < 1:242426/146‑1 (MQ=255) gATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATGGGGCGCTACAAGCTCATCCGGCTGgaagaa > 2:148028/1‑150 (MQ=255) caacTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTg > 1:227148/1‑87 (MQ=255) caacTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTg < 2:227148/87‑1 (MQ=255) caacTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAAc > 1:147421/1‑91 (MQ=255) caacTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAAc < 2:147421/91‑1 (MQ=255) aacTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATGGGgc > 1:272170/1‑109 (MQ=255) aacTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATGGGgc < 2:272170/109‑1 (MQ=255) cTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATGGGGCGCTACAAGCTCATCCGGCTGGAAGAACCCCCGTTCGATGCCCa < 2:785501/150‑1 (MQ=255) gCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGtt > 2:444395/1‑70 (MQ=255) gCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGtt < 1:444395/70‑1 (MQ=255) aaccgatctcggcgtccatcgcggcgccgAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATGGGGCGCTACAAGCTCATCCGGCTGGAAGAACCCCCGTTCGATGCCCAGGCCTg > 1:132395‑M2/30‑150 (MQ=255) cgatctcggcgtccatcgcggcgccgAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGa > 1:546027‑M2/27‑83 (MQ=255) cgatctcggcgtccatcgcggcgccgAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGa < 2:546027‑M2/57‑1 (MQ=255) cgatctcggcgtccatcgcggcgccgAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATg < 2:121792‑M2/68‑1 (MQ=255) cgatctcggcgtccatcgcggcgccgAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATg > 1:121792‑M2/27‑94 (MQ=255) gccgAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATGGGGCGCTACAAGCTCATCCGGCTGGAAGAACCCCCGTTCGATGCCCAGGCCTGGGCCACCCTCACCGACCCCGCCAAc > 1:332959‑M2/5‑150 (MQ=255) | AATCGCCCGGTAAAGGGCGTTTTCTCAACAGCCCAAGCGGCTGGACGTCTGAAACCGTCAACAGCCAAAAGCTCAAGGCCTATGGCCTGGATGGCCTTTACAACAACTTCCGCAGTGGCTCCGGCGCCGCGATGGACGCCGAGATCGGTTCGGCAATCCGGCGCGGCAAACCTGTGCTGTTCTACTACTGGAACCCGACCCCGCTGATGGGGCGCTACAAGCTCATCCGGCTGGAAGAACCCCCGTTCGATGCCCAGGCCTGGGCCACCCTCACCGACCCCGCCAAC > NC_002947/4037699‑4037985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |