New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4450528	50 (1.690)	6 (0.210)	5/234	NT	12.1%	coding (88/3564 nt)	nicB	nicotinate dehydrogenase subunit B
	?	NC_002947	= 4450543	40 (1.420)					coding (103/3564 nt)	nicB	nicotinate dehydrogenase subunit B

AAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCTCGCTGGCGCAAATCGTCGCCGAAGAGCTGGAC  >  NC_002947/4450395‑4450692                                                                                                                                                     |                                                                                                                                                      aaaTCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAa                                                                                                                                                      >  1:705104‑M2/1‑149 (MQ=255)       tGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGt                                                                                                                                                <  2:496826/150‑1 (MQ=255)                         cTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGa                                                                                                                              >  2:625369/1‑150 (MQ=255)                               agaCCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGa                                                                                                                        <  2:180223/150‑1 (MQ=255)                                   ccGGAGAAAGCCATGAACCACTCACAACAGGTGCGGCGCAGCCACCACGTGATAGCCAAGACCGGCGTGGTGGGGATCGTCGAGCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGCACGTGAGCTg                                                                                                                    >  1:14863/1‑150 (MQ=255)                                    cGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTgg                                                                                                                   >  2:614752/1‑150 (MQ=255)                                       agaAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGgcgc                                                                                                                <  2:248705/150‑1 (MQ=255)                                          aaGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGt                                                                                                             <  2:14863/150‑1 (MQ=255)                                               aTGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATc                                                                                                        >  2:681342/1‑150 (MQ=255)                                                          acaacaGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACAGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGTCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGcga                                                                                             >  2:291068/1‑150 (MQ=255)                                                            aacaGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGcgacg                                                                                           >  1:312069/1‑150 (MQ=255)                                                            aacaGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGcgacg                                                                                           >  1:555191/1‑150 (MQ=255)                                                             acaGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGcgacga                                                                                          >  2:314952/1‑150 (MQ=255)                                                              caGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCgacgac                                                                                         >  2:354875/1‑150 (MQ=255)                                                               aGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATcgcg                                                                                                     <  2:596830/137‑1 (MQ=255)                                                               aGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATcgcg                                                                                                     >  1:596830/1‑137 (MQ=255)                                                               aGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGacgacg                                                                                        >  2:650905/1‑150 (MQ=255)                                                                     ccAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGt                                                                                                                                                <  2:307229/88‑1 (MQ=255)                                                                     ccAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGt                                                                                                                                                >  1:307229/1‑88 (MQ=255)                                                                      cAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAAc                                                                                                                            >  2:548896/1‑107 (MQ=255)                                                                      cAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAAc                                                                                                                            <  1:548896/107‑1 (MQ=255)                                                                          cgcgACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTAc                                                                             <  1:625369/150‑1 (MQ=255)                                                                             gACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGcc                                                                          <  1:650905/150‑1 (MQ=255)                                                                             gACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGcc                                                                          <  1:354875/150‑1 (MQ=255)                                                                             gACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGcc                                                                          <  1:614752/150‑1 (MQ=255)                                                                                      ctgGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGt                                                                 >  1:290619/1‑150 (MQ=255)                                                                                       tgGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTc                                                                <  2:555191/150‑1 (MQ=255)                                                                                           cAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGCTGGGATGGTCTACGCCTTCAATGGTCATGt                                                            >  1:202139/1‑150 (MQ=255)                                                                                           cAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGt                                                            >  1:630257/1‑150 (MQ=255)                                                                                           cAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGt                                                            >  2:640832/1‑150 (MQ=255)                                                                                            aaGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAg                                                                                                                       <  2:188151/90‑1 (MQ=255)                                                                                            aaGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAg                                                                                                                       >  1:188151/1‑90 (MQ=255)                                                                                              gACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGa                                                         <  1:172903/150‑1 (MQ=255)                                                                                                   gCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTgg                                                    <  1:314952/150‑1 (MQ=255)                                                                                                       gtTGCTGATCGTCGACCAGATCACCACGATCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGTGCTGTTCATCGCGGTCAGCGACGAAGGCATGGTCTACGTCTTCAATGGTCATGTCGACCTGGGCAc                                                >  1:222484/1‑150 (MQ=255)                                                                                                         tGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTg                                              <  2:630257/150‑1 (MQ=255)                                                                                                          gCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTg                                              >  1:139755/1‑149 (MQ=255)                                                                                                          gCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTg                                              <  2:139755/149‑1 (MQ=255)                                                                                                          gCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGAGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTgg                                             <  2:312069/150‑1 (MQ=255)                                                                                                                     aCCAGATCACCCCGCCCTCAGTCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCt                                  >  1:406189/1‑150 (MQ=255)                                                                                                                           tCACCCCGCCCTCAGTCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCTCGCTgg                            <  2:406189/150‑1 (MQ=255)                                                                                                                               cccGCCCTCAGGCCCTGTGGCCAagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagt                                                                      <  2:400842‑M2/104‑82 (MQ=255)                                                                                                                               cccGCCCTCAGGCCCTGTGGCCAagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagt                                                                      >  1:400842‑M2/1‑23 (MQ=255)                                                                                                                               cccGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCa                                           >  1:116391/1‑131 (MQ=255)                                                                                                                               cccGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCa                                           <  2:116391/131‑1 (MQ=255)                                                                                                                               cccGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCTCGCTGGCGCa                        >  1:635156/1‑150 (MQ=255)                                                                                                                                ccGCCCTCAGGCCCTGTGGCCAagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagt                                                                      <  1:788107‑M2/103‑82 (MQ=255)                                                                                                                                ccGCCCTCAGGCCCTGTGGCCAagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagt                                                                      >  2:788107‑M2/1‑22 (MQ=255)                                                                                                                                 cGCCCTCAGGCCCTGTGGCCAagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagtggttcatggctttctc                                                      <  1:65264‑M2/118‑98 (MQ=255)                                                                                                                                 cGCCCTCAGGCCCTGTGGCCAagggcggggtgatctggtcgacgatcagcaacacgccggtcttggccagcagttggtcgcggctgggcacctgttgtgagtggttcatggctttctc                                                      >  2:65264‑M2/1‑21 (MQ=255)                                                                                                                                                    cAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATg                                                             <  1:537084/92‑1 (MQ=255)                                                                                                                                                    cAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATg                                                             >  2:537084/1‑92 (MQ=255)                                                                                                                                                    cAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCTCGCTGGCGCAAAt                     <  1:438321/132‑1 (MQ=255)                                                                                                                                                    cAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCTCGCTGGCGCAAAt                     >  2:438321/1‑132 (MQ=255)                                                                                                                                                     aaGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCCCATCGCCCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCTCGCTGGCGCAAATCGTCGCCGAAGAGCTGGAc  <  2:222484/150‑1 (MQ=255)                                                                                                                                                     aaGGGCGGGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCTCGCTGGCGCAAATCGTCGCCGAAGAGCTGGAc  <  2:389636/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      AAATCCTGCGCGCCGTGCGCCGCGCTGCCGAGACCCGGAGAAAGCCATGAACCACTCACAACAGGTGCCCAGCCGCGACCAACTGCTGGCCAAGACCGGCGTGTTGCTGATCGTCGACCAGATCACCCCGCCCTCAGGCCCTGTGGCCAAGGGCGTGACACCTACAGTCAAGGAACGTGAGCTGGCGCTGTTCATCGCGGTCAGCGACGACGGCATGGTCTACGCCTTCAATGGTCATGTCGACCTGGGCACTGGCATCCGTACCTCGCTGGCGCAAATCGTCGCCGAAGAGCTGGAC  >  NC_002947/4450395‑4450692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.