New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 559417016 (0.540)6 (0.260) 5/190 NT 29.8% intergenic (‑66/+79) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase
?NC_002947 = 5594207 16 (0.700)intergenic (‑103/+42) PP_4921/thiC NCS1 family transporter/phosphomethylpyrimidine synthase

GGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCG  >  NC_002947/5594059‑5594351
                                                                                                                                                    |                                                                                                                                                
tcgagcaaggcatgcgtgagcaggccgagcggttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgcttgct                                                                                                                                                 <  2:714070‑M1/66‑1 (MQ=255)
    gcaaggcatgcgtgagcaggccgagcggttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTcgc                                                                                                                                             >  1:503155‑M1/81‑150 (MQ=255)
      aaggcatgcgtgagcaggccgagcggttccgccaggaaggcagccagctgtaccacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                                                                                           >  1:714070‑M1/79‑150 (MQ=255)
            gATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagc                                                                                                                                     <  1:690259‑M2/150‑14 (MQ=255)
                         gaACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagg                                                                                                                        >  2:690259‑M2/1‑124 (MQ=255)
                               gctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAgg                                                                                                                  >  1:156667/1‑150 (MQ=255)
                                           catggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                      >  2:692804/1‑150 (MQ=255)
                                             tggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCACGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGa                                                                                                    >  2:103543/1‑150 (MQ=255)
                                               gtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACt                                                                                                  >  1:630949/1‑150 (MQ=255)
                                                    gTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                                                                             <  2:151805/150‑1 (MQ=255)
                                                     tCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTgg                                                                                            >  1:252874/1‑150 (MQ=255)
                                                         accacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                                                                                           >  2:621822‑M1/28‑99 (MQ=255)
                                                         accacaaagtctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                                                                                           <  1:621822‑M1/72‑1 (MQ=255)
                                                             aGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgagcaagcccgctccc                                                                                                                             >  1:182309‑M2/1‑88 (MQ=255)
                                                             aGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgagcaagcccgctccc                                                                                                                             <  2:182309‑M2/109‑22 (MQ=255)
                                                               tGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacag                                                                                                                         <  2:57971‑M2/111‑26 (MQ=255)
                                                               tGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacag                                                                                                                         >  1:57971‑M2/1‑86 (MQ=255)
                                                                  tctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTcgc                                                                                                                                             <  1:537563‑M1/70‑1 (MQ=255)
                                                                  tctaaaccgcagcaccttACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTcgc                                                                                                                                             >  2:537563‑M1/19‑88 (MQ=255)
                                                                         tGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcg                                                                                         >  2:634666‑M2/1‑76 (MQ=255)
                                                                         tGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcg                                                                                         <  1:634666‑M2/133‑58 (MQ=255)
                                                                         tGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTg                                                                        >  1:87935/1‑150 (MQ=255)
                                                                           gCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc                                                                      <  2:630949/150‑1 (MQ=255)
                                                                               acacCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttc                                                                                                                                               <  2:373438‑M2/73‑4 (MQ=255)
                                                                               acacCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttc                                                                                                                                               >  1:373438‑M2/1‑70 (MQ=255)
                                                                                 accaccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc                                                                      <  1:278899/144‑1 (MQ=255)
                                                                                 accaccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc                                                                      >  2:278899/1‑144 (MQ=255)
                                                                                 accaccCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGTTGCCGTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGCTTTAGACTTTGTGGTCCAGCTGGCTGCCTTCCTGGCGGAAcc                                                                >  2:312361/1‑150 (MQ=25)
                                                                                           GGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGtt                                                                                                        >  1:698517‑M1/1‑100 (MQ=255)
                                                                                           GGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGtt                                                                                                        <  2:698517‑M1/100‑1 (MQ=255)
                                                                                            GGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGc                                                     <  2:42864‑M1/150‑1 (MQ=255)
                                                                                             GAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTCTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCt                                                    <  1:683618‑M1/150‑1 (MQ=255)
                                                                                                 GGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTCTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACg                                                >  2:683618‑M1/1‑150 (MQ=255)
                                                                                                   GCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCTCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTCCAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCa                                              <  1:689188‑M1/150‑1 (MQ=255)
                                                                                                     TTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                           >  1:319676‑M1/1‑135 (MQ=255)
                                                                                                     TTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                           <  2:319676‑M1/135‑1 (MQ=255)
                                                                                                     TTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATg                                            >  1:42864‑M1/1‑150 (MQ=255)
                                                                                                         CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTcc                                                                                                                              <  2:41291‑M1/64‑1 (MQ=255)
                                                                                                         CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTcc                                                                                                                              >  1:41291‑M1/1‑64 (MQ=255)
                                                                                                         CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCt                                                                         <  2:394327‑M1/117‑1 (MQ=255)
                                                                                                         CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCt                                                                         >  1:394327‑M1/1‑117 (MQ=255)
                                                                                                          cgcgAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacat                                                                                    >  2:99917‑M2/1‑43 (MQ=255)
                                                                                                          cgcgAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacat                                                                                    <  1:99917‑M2/105‑63 (MQ=255)
                                                                                                          cgcgAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgc                                                                                                             >  1:776267‑M2/1‑43 (MQ=255)
                                                                                                          cgcgAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgc                                                                                                             <  2:776267‑M2/80‑38 (MQ=255)
                                                                                                                       aaaGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTcaca                          <  1:103543/150‑1 (MQ=255)
                                                                                                                           ccGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCa                      >  2:640106/1‑150 (MQ=255)
                                                                                                                              gTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACgg                   <  1:791801/150‑1 (MQ=255)
                                                                                                                                         cGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg        <  1:692804/150‑1 (MQ=255)
                                                                                                                                              tgcttgctTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCGCATCCCCAGCCTCGAGCTTGGCAGc   >  2:45568/1‑150 (MQ=255)
                                                                                                                                               gcttgcttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCg  <  2:252874/150‑1 (MQ=255)
                                                                                                                                                    cttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCg                                                                     >  2:21922/1‑78 (MQ=255)
                                                                                                                                                    cttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCg                                                                     <  1:21922/78‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
GGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCG  >  NC_002947/5594059‑5594351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.