New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5968466 =	21 (0.710)	4 (0.170)	4/202	NT	15.0%	coding (162/360 nt)	PP_5723	hypothetical protein
	?	NC_002947	5968570 =	28 (1.160)					coding (58/360 nt)	PP_5723	hypothetical protein

AAAAATGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGCGACCAGGCCTCGCGCCTGTTCAGCAGCGAT  >  NC_002947/5968422‑5968717                                                                                                                                                     |                                                                                                                                                    aaaaaTGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGcac                                                                                                                                                    >  2:371657/1‑150 (MQ=255)            aCAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCaa                                                                                                                                         <  1:371657/150‑1 (MQ=255)               gCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGACTCGCGTCCCAACTGCGTCGGGAGGCGCCCCCCAAGATTCGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAAtgt                                                                                                                                      <  1:776274/150‑1 (MQ=255)                                    tttGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAgg                                                                                                                                             >  2:593527/1‑122 (MQ=255)                                    tttGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAgg                                                                                                                                             <  1:593527/122‑1 (MQ=255)                                      tgtgGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTgtgc                                                                                                               <  2:448975/150‑1 (MQ=255)                                      tgtgGGAGAGGCCTTGAGTAACGATTGGGGTACGACGCGCCTCCCAAGATTTGTGCTTTGATGCTGATATTGCCGGGGCCGCTGTTCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTgtgc                                                                                                               <  1:513298/150‑1 (MQ=255)                                        tgtgAGCGGCTTTTCGTCGCGATTGGTGTGCGAAGCCCCACCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGAAGCACAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTgtgcgt                                                                                                             <  1:314816/147‑1 (MQ=255)                                         gggAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAgg                                                                                                                                             >  2:675226/1‑117 (MQ=255)                                         gggAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAgg                                                                                                                                             <  1:675226/117‑1 (MQ=255)                                                GCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGt                                                                                                                     <  2:649303‑M1/134‑1 (MQ=255)                                                GCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGt                                                                                                                     >  1:649303‑M1/1‑134 (MQ=255)                                                      CGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGCCGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTggcggc                                                                                               >  1:227025‑M1/1‑150 (MQ=255)                                                        tcgcgattgggctgcacagcggccccggcaatatcagcatcaaggcacaaatcttggggggcgcttcgcaccccaatcgcgacgcaaggccgcACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCa                                                                                             >  2:758556‑M2/94‑150 (MQ=255)                                                        TCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCa                                                                                                                        <  2:265612‑M1/123‑1 (MQ=255)                                                        TCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCa                                                                                                                        >  1:265612‑M1/1‑123 (MQ=255)                                                           cgattgggctgcacagcggccccggcaatatcagcatcaaggcacaaatcttggggggcgcttcgcaccccaatcgcgacgcaaggccgcACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCAttt                                                                                          >  1:130189‑M2/91‑150 (MQ=255)                                                                 GGGTGCGAAGCGCCCCCCGAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGt                                                                                    <  2:724444‑M1/150‑1 (MQ=255)                                                                       gAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGt                                                                              >  2:467444/1‑150 (MQ=255)                                                                        aaGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTg                                                                             <  1:520130/150‑1 (MQ=255)                                                                         agcggccccggcaatatcagcatcaaggcacaaatcttggggggcgcttcgcaccccaatcgcgacgcaaggccgcACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTgg                                                                            <  2:130189‑M2/74‑1 (MQ=255)                                                                               ccccAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTTGACAGcc                                                                      >  2:679918/1‑150 (MQ=255)                                                                                cccAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGccc                                                                     >  2:648268/1‑150 (MQ=255)                                                                                  cAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTTCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTATcc                                                                                      >  1:251484/1‑131 (MQ=255)                                                                                  cAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTcc                                                                                      <  2:251484/131‑1 (MQ=255)                                                                                   aaGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCAt                                                                  <  1:724444/150‑1 (MQ=255)                                                                                              cTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTgtgc                                                                                                               <  1:393375/94‑1 (MQ=255)                                                                                              cTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTgtgc                                                                                                               >  2:393375/1‑94 (MQ=255)                                                                                              cTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCa                                                       >  2:741882/1‑150 (MQ=255)                                                                                               ttGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCaa                                                      >  2:667734/1‑150 (MQ=255)                                                                                               ttGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCaa                                                      >  1:177242/1‑150 (MQ=255)                                                                                                 aaggcacaaatcttggggggcgcttcgcaccccaatcgcgacgcaaggccgcACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGGTTCAGTGGACAGCCCCATGCTCGCGCCCAAAg                                                    <  1:758556‑M2/98‑1 (MQ=255)                                                                                                    gCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTCCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGccc                                                 >  2:585819/1‑150 (MQ=255)                                                                                                     cTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCt                                                <  1:648268/150‑1 (MQ=255)                                                                                                             gCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGAt                                         <  2:192189/149‑1 (MQ=255)                                                                                                             gCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGAt                                         >  1:192189/1‑149 (MQ=255)                                                                                                                     cGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGc                                >  1:190272/1‑150 (MQ=255)                                                                                                                     cGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCATTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGc                                >  2:459659/1‑150 (MQ=255)                                                                                                                      gCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGCg                               >  2:120300/1‑150 (MQ=255)                                                                                                                           gCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGCGACCAg                          <  1:667734/150‑1 (MQ=255)                                                                                                                                    tcgcgacgcaaggccgcACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCATTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGCGACCAGGCCTCgcgc                 <  1:459659‑M2/133‑1 (MQ=255)                                                                                                                                        gacgcaaggccgcACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGCGACCAGGCCTCGCGCCTGt             >  2:609241‑M2/14‑150 (MQ=255)                                                                                                                                                  cgcACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGCGACCAGGCCTCGCGCCTGTTCAGCAGCGa   <  2:190272‑M2/147‑1 (MQ=255)                                                                                                                                                   gcACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGCGACCAGGCCTCGCGCCTGTTCAGCAGCGAt  >  1:545529‑M2/3‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AAAAATGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGACGCAAGGCCGCACACAAAGGCCAATGTGCACTCAGGCGCCAGGTTTGTGCGTGCTACACTGGCGGCCATTTCTCCGTTTCAGTGGACAGCCCCATGCTCGCGCCCAAAGCCCTTCTCGATGCCCTGAGCGACCAGGCCTCGCGCCTGTTCAGCAGCGAT  >  NC_002947/5968422‑5968717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.