| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4564007 = | 36 (0.940) | 8 (0.220) | 8/262 | 3.2 | 19.1% | intergenic (‑103/‑795) | vgrG‑III/glgA | type VI secretion system protein/glycogen synthase |
| ? | NC_002947 | 4564038 = | 34 (0.940) | intergenic (‑134/‑764) | vgrG‑III/glgA | type VI secretion system protein/glycogen synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATGCTGTAGGAAATTGCCTGCGGAATCTCCATTTATATTAAACCCATCGTTCCTGTCTTGTCATGGTGATACGGTTTAAGTTGCTCTTCAATCCACTGCCTCATCCTGATCGCCGTCATGGGGTGAAGCCCGCAATGCCAAGCATCTAGCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4564163‑4564007‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcttCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAACTTACAACTTTTTA > NC_002947/4564038‑4564179 CATGCTGTAGGAAATTGCCTGCGGAATCTCCATTTATATTAAACCCATCGTTCCTGTCTTGTCATGGTGATACGGTTTAAGTTGCTCTTCAATCCACTGCCTCATCCTGATCGCCGTCATGGGGTGAAGCCCGCAATGCCAAGCATCTAG > 2:402646/1‑150 TAGGAAATTGCCTGCGGAATCTCCATTTATATTAAACCCATCGTTCCTGTCTTGTCATGGTGATACGGTTTAAGTTGCTCTTCAATCCACTGCCTCATCCTGATCGCCGTCATGGGGTGAAGCCCGCAATGCCAAGCATCTAGCGGGCTT < 1:402646/150‑1 TAGGAAATTGCCTGCGGAATACCCATTAATATTAAACCCATCGTTCCTGTCTTGTCATGGTGATACGGTTTAAGTTGCTCTTCAATCCACTGCCTCATCCTGATCGCCGTCATGGGGTGAAGCCCGCAATGCCAAGCATCTAGCGGGCTT > 2:539169/1‑150 GGTGAAGCCCGCAATGCCAAGCATCTAGCGGGCTTGACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAA < 1:149487/103‑1 GGTGAAGCCCGCAATGCCAAGCATCTAGCGGGCTTGACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAA > 2:149487/1‑103 TGAAGCCCGCAATGCCAAGCATCTAGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGA > 1:13166/1‑74 TGAAGCCCGCAATGCCAAGCATCTAGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGA < 2:13166/74‑1 GCCCGCAATGCCAAGCATCTAGTGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGA < 1:189075/94‑1 GCCCGCAATGCCAAGCATCTAGTGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGA > 2:189075/1‑94 CCCGCAATGCCAAGCATCTAGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTA < 1:300338/84‑1 CCCGCAATGCCAAGCATCTAGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTA > 2:300338/1‑84 GCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAACTTACAACTTTTTA < 1:321398/150‑1 CATGCTGTAGGAAATTGCCTGCGGAATCTCCATTTATATTAAACCCATCGTTCCTGTCTTGTCATGGTGATACGGTTTAAGTTGCTCTTCAATCCACTGCCTCATCCTGATCGCCGTCATGGGGTGAAGCCCGCAATGCCAAGCATCTAGCGGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4564163‑4564007‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcttCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAACTTACAACTTTTTA > NC_002947/4564038‑4564179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |