New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4564007 =	36 (0.940)	8 (0.220)	8/262	3.2	19.1%	intergenic (‑103/‑795)	vgrG‑III/glgA	type VI secretion system protein/glycogen synthase
	?	NC_002947	4564038 =	34 (0.940)					intergenic (‑134/‑764)	vgrG‑III/glgA	type VI secretion system protein/glycogen synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAACTTACAACTTTTTA  >  NC_002947/4563892‑4564179                                                                                                                                                   |                                                                                                                                              cGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCAcc                                                                                                                                            <  1:792023/150‑1 (MQ=255)   gACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCAcccc                                                                                                                                          <  2:412367/150‑1 (MQ=255)                gTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCa                                                                                                                             >  1:907353/1‑150 (MQ=255)                       tACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAg                                                                                                                      >  2:489060/1‑150 (MQ=255)                            gCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGt                                                                                                                 <  2:774035/150‑1 (MQ=255)                                  atGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTg                                                                                                           >  1:539169/1‑150 (MQ=255)                                      ttGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAaga                                                                                                       <  1:489060/150‑1 (MQ=255)                                      ttGCCGGCGAAAAACAACCACACCCTGGCTCTCTTCAAGATGAGAATATCGAACTAAGTTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAaga                                                                                                       <  2:257706/150‑1 (MQ=255)                                        gCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGc                                                                                                     <  1:392973/150‑1 (MQ=255)                                            gCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTg                                                                                                                >  2:771513/1‑135 (MQ=255)                                            gCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTg                                                                                                                <  1:771513/135‑1 (MQ=255)                                                 aaaCAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAAc                                                                                            <  2:170681/150‑1 (MQ=255)                                                    caacCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGt                                                                                         >  2:321398/1‑150 (MQ=255)                                                     aacCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTa                                                                                        >  1:518634/1‑150 (MQ=255)                                                             ccTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATg                                                                                >  2:48544/1‑150 (MQ=255)                                                              cTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAagag                                                                                                      >  1:237984/1‑127 (MQ=255)                                                              cTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAagag                                                                                                      <  2:237984/127‑1 (MQ=255)                                                              cTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGa                                                                               >  2:808760/1‑150 (MQ=255)                                                                 gCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACaa                                                                            <  2:518634/150‑1 (MQ=255)                                                                             aTGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGAt                                                                >  2:231456/1‑150 (MQ=255)                                                                               gagaATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATgg                                                              <  1:354680/150‑1 (MQ=255)                                                                                 gaATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGt                                                            <  1:231456/150‑1 (MQ=255)                                                                                           cTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAata                                                      <  2:181458/146‑1 (MQ=255)                                                                                           cTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAata                                                      >  1:181458/1‑146 (MQ=255)                                                                                            tAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAAt                                                 <  2:907353/150‑1 (MQ=255)                                                                                                 tGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGgaga                                            <  1:48544/150‑1 (MQ=255)                                                                                                                    aaGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATTAATGGGTATTCCGCAGGCAATTTCCTa                         <  2:539169/150‑1 (MQ=255)                                                                                                                    aaGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTa                         >  1:402646/1‑150 (MQ=255)                                                                                                                           cTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATg                  <  2:402646/150‑1 (MQ=255)                                                                                                                              gATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAAc               <  1:808760/150‑1 (MQ=255)                                                                                                                                   ttGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACa                       >  2:378201/1‑137 (MQ=255)                                                                                                                                   ttGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACa                       <  1:378201/137‑1 (MQ=255)                                                                                                                                      gCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAACTTa            <  1:792914/145‑1 (MQ=255)                                                                                                                                      gCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAACTTa            >  2:792914/1‑145 (MQ=255)                                                                                                                                           gCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAACTTACAACTTTTTa  <  1:321398/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                              CGGACTGTTTCATGAGTTGCTCTACCCGCCATCATGTTTGCCGGCGAAAAACAACCACACCCTGGCTTTCTTCAAGATGAGAATATCGAACTAAATTGGCCCGCCACCAAGGTTCAAGCCCGCTAGATGCTTGGCATTGCGGGCTTCACCCCATGACGGCGATCAGGATGAGGCAGTGGATTGAAGAGCAACTTAAACCGTATCACCATGACAAGACAGGAACGATGGGTTTAATATAAATGGAGATTCCGCAGGCAATTTCCTACAGCATGAACTTACAACTTTTTA  >  NC_002947/4563892‑4564179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.