New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4443120	34 (0.890)	9 (0.240)	9/268	3.0	22.0%	coding (906/1314 nt)	nicT	metabolite transport protein NicT
	?	NC_002947	= 4443151	31 (0.840)					coding (875/1314 nt)	nicT	metabolite transport protein NicT

TGGCGAACAGCACCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACAC  >  NC_002947/4442972‑4443266                                                                                                                                                     |                                                                                                                                                   tGGCTAAGACCACCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGGTAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCa                                                                                                                                                   >  2:318669/1‑150 (MQ=255)      aaCAGCACCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGcgcg                                                                                                                                              <  1:757575/150‑1 (MQ=255)                   tcatcaCCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCGCGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCAGCCAGGCTGGGaa                                                                                                                                 >  2:141799/1‑150 (MQ=255)                        aCCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGcc                                                                                                                            <  2:148764/150‑1 (MQ=255)                          cAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGt                                                                                                                          >  1:373862/1‑150 (MQ=255)                          cAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGGCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGt                                                                                                                          <  1:20344/150‑1 (MQ=255)                                   gCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggcc                                                                                                                 <  1:574033‑M1/150‑36 (MQ=255)                                   gCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggcc                                                                                                                 <  2:843973‑M2/150‑5 (MQ=255)                                       aaCAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGata                                                                                                             >  2:263762/1‑150 (MQ=255)                                            ggTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGaa                                                                                                        <  1:843973/150‑1 (MQ=255)                                               gctgctGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGgt                                                                                                     <  1:782510/150‑1 (MQ=255)                                                ctgctgGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatga                                                                                                    >  1:807193‑M1/1‑102 (MQ=255)                                                ctgctgGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGgtg                                                                                                    >  1:394866/1‑150 (MQ=255)                                                 tgctgGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGc                                                                                                                      >  2:176759/1‑131 (MQ=255)                                                 tgctgGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGc                                                                                                                      <  1:176759/131‑1 (MQ=255)                                                    tgGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatcgg                                                                                                <  2:807193‑M1/150‑53 (MQ=255)                                                              gATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGc                                                                                      >  2:351760/1‑150 (MQ=255)                                                               aTTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCa                                                                                     >  1:699829/1‑150 (MQ=255)                                                                     ccAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCgg                                                                               >  1:243175/1‑150 (MQ=255)                                                                      cAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGa                                                                              <  2:132236/150‑1 (MQ=255)                                                                      cAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCAAGCGCGGCAAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGa                                                                              >  1:791524/1‑150 (MQ=255)                                                                       aaTGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccga                                                                                    <  1:798915‑M2/143‑34 (MQ=255)                                                                       aaTGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccga                                                                                    >  2:798915‑M2/1‑110 (MQ=255)                                                                        aTGATAAACGGCACGATGATGTGCCAGCGGCGCGCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATg                                                                            <  2:72670/150‑1 (MQ=255)                                                                                            gtgCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggca                                                                                                             <  2:478501‑M1/97‑40 (MQ=255)                                                                                            gtgCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggca                                                                                                             >  1:478501‑M1/1‑58 (MQ=255)                                                                                               ccAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCAt                                                     >  1:618964/1‑150 (MQ=255)                                                                                                cAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATc                                                    <  2:791524/150‑1 (MQ=255)                                                                                                cAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGAATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTTACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATc                                                    <  1:141799/150‑1 (MQ=255)                                                                                                      cgcTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAg                                              <  2:804043/150‑1 (MQ=255)                                                                                                         tCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTTGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGgcg                                           >  1:461975/1‑150 (MQ=255)                                                                                                                ggCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCa                                    <  2:618964/150‑1 (MQ=255)                                                                                                                   ggTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatc                                                                                                  >  1:892277‑M1/1‑35 (MQ=255)                                                                                                                   ggTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatc                                                                                                  <  2:892277‑M1/85‑51 (MQ=255)                                                                                                                    gTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGAt                                >  2:286296/1‑150 (MQ=255)                                                                                                                     tCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcatt                                      >  2:798915‑M1/1‑33 (MQ=255)                                                                                                                     tCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcatt                                      <  1:798915‑M1/143‑111 (MQ=255)                                                                                                                         aGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGaaa                           >  2:597874/1‑150 (MQ=255)                                                                                                                          gCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGaaaa                          <  2:394866/150‑1 (MQ=255)                                                                                                                               ccccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGa                     <  2:373862/150‑1 (MQ=255)                                                                                                                               ccccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGa                     <  2:243175/150‑1 (MQ=255)                                                                                                                               ccccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGa                     >  1:356721/1‑150 (MQ=255)                                                                                                                                 ccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggcca                   <  2:807193‑M2/150‑99 (MQ=255)                                                                                                                                   gATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgacc                                                                                  >  1:892277‑M2/1‑50 (MQ=255)                                                                                                                                   gATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgacc                                                                                  <  2:892277‑M2/85‑36 (MQ=255)                                                                                                                                     tCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggccagcag               >  1:807193‑M2/1‑48 (MQ=255)                                                                                                                                     tCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATCGAAGGTGACGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATaccac               <  1:318669/150‑1 (MQ=255)                                                                                                                                          aGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATgct                                                                                                         >  1:856565/1‑53 (MQ=255)                                                                                                                                          aGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATgct                                                                                                         <  2:856565/55‑3 (MQ=255)                                                                                                                                             aTGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATc       >  1:696982/1‑150 (MQ=255)                                                                                                                                              tGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcac                                                           <  2:478501‑M2/97‑59 (MQ=255)                                                                                                                                              tGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcac                                                           >  1:478501‑M2/1‑39 (MQ=255)                                                                                                                                                  ggCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggccagcagcaccttgttcagc  <  2:843973‑M1/150‑147 (MQ=255)                                                                                                                                                  ggCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggccagcagcaccttgttcagc  <  1:574033‑M2/150‑116 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TGGCGAACAGCACCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACAC  >  NC_002947/4442972‑4443266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.