New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4443120	34 (0.890)	9 (0.240)	9/268	3.0	22.0%	coding (906/1314 nt)	nicT	metabolite transport protein NicT
	?	NC_002947	= 4443151	31 (0.840)					coding (875/1314 nt)	nicT	metabolite transport protein NicT

GCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTGAAGAA  >  NC_002947/4443006‑4443281                                                                                                                                                  |                                                                                                                                   gCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggcc                                                                                                                                <  2:843973‑M2/150‑5 (MQ=255)     aaCAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGata                                                                                                                            >  2:263762/1‑150 (MQ=255)          ggTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGaa                                                                                                                       <  1:843973/150‑1 (MQ=255)             gctgctGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGgt                                                                                                                    <  1:782510/150‑1 (MQ=255)              ctgctgGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGgtg                                                                                                                   >  1:394866/1‑150 (MQ=255)                            gATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGc                                                                                                     >  2:351760/1‑150 (MQ=255)                             aTTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCa                                                                                                    >  1:699829/1‑150 (MQ=255)                                   ccAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCgg                                                                                              >  1:243175/1‑150 (MQ=255)                                    cAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGa                                                                                             <  2:132236/150‑1 (MQ=255)                                    cAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCAAGCGCGGCAAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGa                                                                                             >  1:791524/1‑150 (MQ=255)                                     aaTGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccga                                                                                                   >  2:798915‑M2/1‑110 (MQ=255)                                     aaTGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccga                                                                                                   <  1:798915‑M2/143‑34 (MQ=255)                                      aTGATAAACGGCACGATGATGTGCCAGCGGCGCGCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATg                                                                                           <  2:72670/150‑1 (MQ=255)                                                             ccAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCAt                                                                    >  1:618964/1‑150 (MQ=255)                                                              cAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATc                                                                   <  2:791524/150‑1 (MQ=255)                                                              cAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGAATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTTACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATc                                                                   <  1:141799/150‑1 (MQ=255)                                                                    cgcTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAg                                                             <  2:804043/150‑1 (MQ=255)                                                                       tCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTTGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGgcg                                                          >  1:461975/1‑150 (MQ=255)                                                                              ggCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCa                                                   <  2:618964/150‑1 (MQ=255)                                                                                  gTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGAt                                               >  2:286296/1‑150 (MQ=255)                                                                                       aGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGaaa                                          >  2:597874/1‑150 (MQ=255)                                                                                        gCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGaaaa                                         <  2:394866/150‑1 (MQ=255)                                                                                             ccccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGa                                    <  2:243175/150‑1 (MQ=255)                                                                                             ccccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGa                                    >  1:356721/1‑150 (MQ=255)                                                                                             ccccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGa                                    <  2:373862/150‑1 (MQ=255)                                                                                               ccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggcca                                  <  2:807193‑M2/150‑99 (MQ=255)                                                                                                 gATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgacc                                                                                                 <  2:892277‑M2/85‑36 (MQ=255)                                                                                                 gATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgacc                                                                                                 >  1:892277‑M2/1‑50 (MQ=255)                                                                                                   tCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggccagcag                              >  1:807193‑M2/1‑48 (MQ=255)                                                                                                   tCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATCGAAGGTGACGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATaccac                              <  1:318669/150‑1 (MQ=255)                                                                                                        aGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATgct                                                                                                                        >  1:856565/1‑53 (MQ=255)                                                                                                        aGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATgct                                                                                                                        <  2:856565/55‑3 (MQ=255)                                                                                                           aTGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATc                      >  1:696982/1‑150 (MQ=255)                                                                                                            tGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcac                                                                          <  2:478501‑M2/97‑59 (MQ=255)                                                                                                            tGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcac                                                                          >  1:478501‑M2/1‑39 (MQ=255)                                                                                                                ggCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggccagcagcaccttgttcagc                 <  1:574033‑M2/150‑116 (MQ=255)                                                                                                                     gcgcGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTaa            <  2:699829/150‑1 (MQ=255)                                                                                                                     gcgcGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTaa            >  1:684357/1‑150 (MQ=255)                                                                                                                       gcgGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAgg          <  1:590627/150‑1 (MQ=255)                                                                                                                        cgGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCATGTTTGAAAATTCGATACCACCGAGGATCTACACCTTAAGGt         <  2:844678/150‑1 (MQ=255)                                                                                                                               gCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTgaagaa  >  1:177440/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                   GCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTGAAGAA  >  NC_002947/4443006‑4443281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.