| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1228140 | 21 (0.850) | 6 (0.260) | 5/248 | 2.4 | 21.9% | coding (1314/4320 nt) | PP_1072 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | = 1228145 | 23 (0.990) | coding (1319/4320 nt) | PP_1072 | leucine‑rich repeat‑containing protein | |||||
CCTGTGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1228033‑1228140‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgaacAGGTGGTTCAACGCCCCTTCGCGGTCACCCATGCGCCAATCTTCATACCCTTCATAAACTTCGTCAGCAATCTGAACCGCGTTTGCCAC < NC_002947/1228145‑1228057 CCTGTGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACAGGTGGTTCAACGC > 2:351930/1‑122CCTGTGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGCGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACAGGTGGTTCAACGC < 1:351930/122‑1 TGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGT < 1:119107/99‑1 TGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGT > 2:119107/1‑99 GTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGTGTTGAACAGGTGGTTCAACGC < 1:543104/68‑1 GTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGTGTTGAACAGGTGGTTCAACGC > 2:543104/1‑68 GCATGGGTGACCGCGAAGGGGCGTTGAACAGGTGGTTCAAC > 1:527949/1‑41 GCATGGGTGACCGCGAAGGGGCGTTGAACAGGTGGTTCAAC < 2:527949/41‑1 TTGAACAGGTGGTTCAACGCCCCTTCGCGGTCACCCATGCGCCAATCTTCATACCCTTCATAAACTTCGT < 1:192966/70‑1 TTGAACAGGTGGTTCAACGCCCCTTCGCGGTCACCCATGCGCCAATCTTCATACCCTTCATAAACTTCGT > 2:192966/1‑70 ACAGGTGGTTCAACGCCCCTTCGCGGTCACCCATGCGCCAATCTTCATACCCTTCATAAACTTCGTCAGCAATCTGAACCGCGTTTGCCAC < 1:591322/91‑1 ACAGGTGGTTCAACGCCCCTTCGCGGTCACCCATGCGCCAATCTTCATACCCTTCATAAACTTCGTCAGCAATCTGAACCGCGTTTGCCAC > 2:591322/1‑91 CCTGTGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1228033‑1228140‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgaacAGGTGGTTCAACGCCCCTTCGCGGTCACCCATGCGCCAATCTTCATACCCTTCATAAACTTCGTCAGCAATCTGAACCGCGTTTGCCAC < NC_002947/1228145‑1228057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |