| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1228140 | 21 (0.850) | 6 (0.260) | 5/248 | 2.4 | 21.9% | coding (1314/4320 nt) | PP_1072 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | = 1228145 | 23 (0.990) | coding (1319/4320 nt) | PP_1072 | leucine‑rich repeat‑containing protein | |||||
CTGAACGTGGCGGGGGCGTTCGTGCCTGTGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTGGCACCGGTGTGCAACTCCGCAGGCAAGGTCAGGCTCATGGCCACGGAT > NC_002947/1228009‑1228293 | cTGAACGTGGCGGGGGCGTTCGTGCCTGTGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGcc > 1:546527/1‑150 (MQ=255) cGGGGGCGTTCGTGCCTGTGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAAcgtcg < 2:460356/150‑1 (MQ=255) ttGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGcc < 1:207088/119‑1 (MQ=255) ttGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGcc > 2:207088/1‑119 (MQ=255) ctgGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTg < 2:606555/150‑1 (MQ=255) gtggCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTgt > 2:591322‑M2/1‑89 (MQ=255) gtggCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTgt < 1:591322‑M2/91‑3 (MQ=255) aaCGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCcgtgcgt < 2:489759/150‑1 (MQ=255) aCGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTgttcaa < 1:192966‑M2/70‑7 (MQ=255) aCGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTgttcaa > 2:192966‑M2/1‑64 (MQ=255) cGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCtt > 1:475944/1‑150 (MQ=255) gTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTg < 2:475944/150‑1 (MQ=255) gTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTg > 2:515974/1‑150 (MQ=255) ttATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCACAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGa < 2:546527/150‑1 (MQ=255) gcATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGa < 2:570351/130‑1 (MQ=255) gcATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGa > 1:570351/1‑130 (MQ=255) tGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGAt > 1:620395/1‑125 (MQ=255) tGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGAt < 2:620395/125‑1 (MQ=255) ggTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTg < 1:441336/129‑1 (MQ=255) ggTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTg > 2:441336/1‑129 (MQ=255) tGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGTCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTg < 2:84247/118‑1 (MQ=255) tGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGTCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTg > 1:84247/1‑118 (MQ=255) gCGTTGAACCACCTgttcaacgccccttcgcggtcacccatgcgccaatcttcatacgcttcataaacttcgtcagcaatctgaaccgcgtttgccaccagcagcacttcgccaagcacagg < 1:351930‑M2/122‑109 (MQ=255) gCGTTGAACCACCTgttcaacgccccttcgcggtcacccatgcgccaatcttcatacccttcataaacttcgtcagcaatctgaaccgcgtttgccaccagcagcacttcgccaagcacagg > 2:351930‑M2/1‑14 (MQ=255) gCGTTGAACCACCTgttcaacaccccttcgcggtcacccatgcgccaatcttcatacccttcataaac > 2:543104‑M2/1‑14 (MQ=255) gCGTTGAACCACCTgttcaacaccccttcgcggtcacccatgcgccaatcttcatacccttcataaac < 1:543104‑M2/68‑55 (MQ=255) gTTGAACCACCTgttcaacgccccttcgcggtcacccatgc < 2:527949‑M2/41‑30 (MQ=255) gTTGAACCACCTgttcaacgccccttcgcggtcacccatgc > 1:527949‑M2/1‑12 (MQ=255) cccccTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTGGCACCGGTGTGCAACTCCGCAGGCAAGGTCAGGCCCATGGCCAc > 2:260201/4‑150 (MQ=255) ccaccTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTGGCACCGGTGTGCAACTCCGCAGGCAAGGTCAGGCTCATGGCCAc > 2:232935/1‑150 (MQ=255) ccaccTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTGGCACCGGTGTGCAACTCCGCAGGCAAGGTCAGGCTCATGGCCAc > 1:374396/1‑150 (MQ=255) accTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTGGCACCGGTGTGCAACTCCGCAGGCAAGGTCAGGCTCATGGCCACgg > 2:539701/1‑150 (MQ=255) cTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTGGCACCGGTGTGCAACTCCGCAGGCAAGGTCAGGCTCATGGCCACgagg > 2:134435/1‑147 (MQ=255) | CTGAACGTGGCGGGGGCGTTCGTGCCTGTGCTTGGCGAAGTGCTGCTGGTGGCAAACGCGGTTCAGATTGCTGACGAAGTTTATGAAGGGTATGAAGATTGGCGCATGGGTGACCGCGAAGGGGCGTTGAACCACCTGTTCAACGTTGCCGCAAACGTCGTGGTCGGCGGGATGATCGCAGCTGGCAGCAAAGTGGCCGTGCGTGCCCTTGAGCGTCTGGCCTTCGTGGATGACTTGGCACCGGTGTGCAACTCCGCAGGCAAGGTCAGGCTCATGGCCACGGAT > NC_002947/1228009‑1228293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |