New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4021060 =	19 (0.760)	5 (0.210)	5/254	2.4	21.1%	coding (1727/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4021082 =	19 (0.790)					coding (1749/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator

AGCAAGTCTGGCCGTTCGCCGCTTTGCAGGTGGGTGAGGGCAGACGGACCGTTCTCGAAGGCGTCCACCCGATAGCCCAGCTCTTCCAACACTTCGCCAATCACCAGGC‑GCAAGGCCGTCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4021183‑4021060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGAGCGATGTCGGCCTGCCTGGCGGCCTGAATGGCCGCC  >  NC_002947/4021082‑4021224                                                                                                                                                                                                                                                                              AGCAAGTCTGGCCGTTCGCCGCTTTGCAGGTGGGTGAGGGCAGACGGACCGTTCTCGAAGGCGTCCACCCGATAGCCCAGCTCTTCCAACACTTCGCCAATCACCAGACGGCCTTG‑CGCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGG                                                                                                                       <  2:360560/150‑1                                                                                                    ATCACCAGGC‑GCAAGGCCGTCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGAGCGATGTCGGCCTGCCTG                    >  1:368481/1‑150                                                                                                      CACCAGGC‑GCAAGGCCGTCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAgc                                                                                             >  1:316992/1‑73                                                                                                      CACCAGGC‑GCAAGGCCGTCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAAC                                                                                             <  2:316992/75‑1                                                                                                                       GTCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGAGCGATGTCGGCCTGCCTGGCGGCCTGAATGGCCGCC  <  1:360560/150‑1                                                                                                                                                                                                                                                                              AGCAAGTCTGGCCGTTCGCCGCTTTGCAGGTGGGTGAGGGCAGACGGACCGTTCTCGAAGGCGTCCACCCGATAGCCCAGCTCTTCCAACACTTCGCCAATCACCAGGC‑GCAAGGCCGTCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4021183‑4021060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGAGCGATGTCGGCCTGCCTGGCGGCCTGAATGGCCGCC  >  NC_002947/4021082‑4021224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.