New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4021060 =	19 (0.760)	5 (0.210)	5/254	2.4	21.1%	coding (1727/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4021082 =	19 (0.790)					coding (1749/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator

GCTGTCGGTGCCTGGCGAGGGTACCCGCATCGAGCTGCTGTTACCCCGCCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGAGCGATGTCGGCCTGCCT  >  NC_002947/4020917‑4021205                                                                                                                                                |                                                                                                                                                   ggcggccattcaggccgccaggcaggccgacatcgctcagcagcaagtctggccgttcgccgctttgcaggtgggtgagggcagacggaccgttctcgaaggcgtccacccgatagcccagctcttccaacacttcgccaatcACCAGAc                                                                                                                                              <  1:360560‑M1/7‑1 (MQ=255)     tCGGTGCCTGGCGAGGGTACCCGCATCGAGCTGCTGTTACCCCGCCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGcc                                                                                                                                          <  2:200076/150‑1 (MQ=255)                   caggcaggccgacatcgctcagcagcaagtctggccgttcgccgctttgcaggtgggtgagggcagacggaccgttctcgaaggcgtccacccgatagcccagctcttccaacacttcgccaatcACCAGACGGCCTTGC‑GCCTGGTGAt                                                                                                                           >  1:368481‑M1/126‑150 (MQ=255)                      tACCCGCATCGAGCTGCCGTTACCCCGCCACCACGAGCAAGCCCAGGCGCCAATCAGCGAGACACTGATCAGCCTCTTGCAAAGAAGCAGCGAGGCTGCAACACGCATTCTGGTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTgg                                                                                                                        <  1:143688/150‑1 (MQ=255)                        cccGCATCGAGCTGCTGTTACCCCGCCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCg                                                                                                                      <  1:87248/150‑1 (MQ=255)                                                    ccacGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGt                                                                                          <  1:292315/150‑1 (MQ=255)                                                    ccacGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGt                                                                                          >  1:361789/1‑150 (MQ=255)                                                    ccacGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGt                                                                                          >  1:204021/1‑150 (MQ=255)                                                          gCAAGCCCAGGCGCTAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGc                                                                                    >  2:8698/1‑150 (MQ=255)                                                              gCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTc                                                                                >  1:622622/1‑150 (MQ=255)                                                                ccAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCga                                                                              <  2:365465/150‑1 (MQ=255)                                                                  aGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCgaga                                                                            >  1:104247/1‑150 (MQ=255)                                                                                aaaCCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTg                                                                                         <  2:193464/123‑1 (MQ=255)                                                                                aaaCCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTg                                                                                         >  1:193464/1‑123 (MQ=255)                                                                                aaaCCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGTACTCCTTCGAGAGCGGTCCgggcggc                                                              <  2:166662/150‑7 (MQ=255)                                                                                            gttctcgaaggcgtccacccgatagcccagctcttccaacacttcgccaatcACCAGACGGCCTTGC‑GCCTGGTg                                                                                                                             <  2:316992‑M1/23‑1 (MQ=255)                                                                                            gctctcgaaggcgtccacccgatagcccagctcttccaacacttcgccaatcACCAGACGGCCTTGC‑GCCTGGTg                                                                                                                             >  1:316992‑M1/53‑75 (MQ=255)                                                                                                    gCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCAACCACCTTCAAAgcgg                                          <  2:24105/150‑1 (MQ=255)                                                                                                         gaagCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAAc                                     <  1:8698/150‑1 (MQ=255)                                                                                                                    gCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTtg                          <  2:204021/150‑1 (MQ=255)                                                                                                                      ccagctcttccaacacttcgccaatcACCAGGCG‑CAAGGCCGTCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTtgct                        <  2:360560‑M1/124‑1 (MQ=255)                                                                                                                           aaCGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGa                   >  2:570053/1‑150 (MQ=255)                                                                                                                               cATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGAGCGa               <  1:570053/150‑1 (MQ=255)                                                                                                                                            gAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGAGCGATGTCGgcctgcct  <  2:622622/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   GCTGTCGGTGCCTGGCGAGGGTACCCGCATCGAGCTGCTGTTACCCCGCCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGC‑GCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGGGTGGACGCCTTCGAGAACGGTCCGTCTGCCCTCACCCACCTGCAAAGCGGCGAACGGCCAGACTTGCTGCTGAGCGATGTCGGCCTGCCT  >  NC_002947/4020917‑4021205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.