| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1443135 | 17 (0.680) | 8 (0.400) | 8/214 | 1.3 | 32.8% | intergenic (‑66/+110) | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator |
| ? | NC_002947 | = 1443153 | 19 (0.940) | intergenic (‑84/+92) | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator | |||||
GGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTG > NC_002947/1442987‑1443282 | ggCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACg > 2:602579/1‑150 (MQ=255) tGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTg < 1:268346/150‑1 (MQ=255) gAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGc > 2:228767/1‑150 (MQ=255) ttGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACaaggcaccgcgcccccccgta < 2:320877‑M1/150‑22 (MQ=255) gTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAAATTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACaaggcaccgcgcccccccgtaggagcgggctt < 1:224817‑M1/150‑33 (MQ=255) acccatcaggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCtt > 1:518341‑M1/94‑150 (MQ=255) gtccatGGCCGGGGAGGGAGGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgccc < 2:8699‑M2/148‑19 (MQ=255) ccATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgcccgc < 2:341325‑M2/150‑21 (MQ=255) aggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCggg < 2:517653‑M1/54‑1 (MQ=255) aggtgctgatcgccaactaaaaagctgctgcaatgcgggggcggacaatggtaggttgctaaccattgatttcgcctgttccggcaCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCggg > 1:517653‑M1/87‑140 (MQ=255) ggCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgcccgcgaag > 1:69643‑M2/1‑126 (MQ=255) cGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTg < 2:365933/150‑1 (MQ=255) gggTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCgtaggagcgggcttgcccgcgaagggacc > 2:570538‑M2/1‑121 (MQ=255) ggTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCgtaggagcgggcttgcccgcgaagggacca > 2:366539‑M2/1‑120 (MQ=255) aCGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAg < 2:400775/150‑1 (MQ=255) gCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCg > 1:322946/1‑150 (MQ=255) gAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGaaa < 1:602579/150‑1 (MQ=255) gCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCaa < 1:228767/150‑1 (MQ=255) gCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCaa > 2:171946/1‑150 (MQ=255) cAGGACGGTCGTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATg < 1:341325/150‑1 (MQ=255) cGGTCTCTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTAC‑GGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGc < 2:396218/150‑1 (MQ=255) gTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTATGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCa > 2:313661/1‑150 (MQ=255) tCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCaa > 2:531212/1‑150 (MQ=255) cTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAAc < 2:66044/150‑1 (MQ=255) ttCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaag < 1:156741‑M1/100‑43 (MQ=255) ttCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaag > 2:156741‑M1/1‑58 (MQ=255) aaGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTgc > 1:241954/1‑150 (MQ=255) gCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACaaggcaccgcgcccccccgtaggagcggg < 1:624754‑M1/76‑30 (MQ=255) gCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACaaggcaccgcgcccccccgtaggagcggg > 2:624754‑M1/1‑47 (MQ=255) tGGTCCCTTCGCGGGCAAGCCCGCTCCTACgggggggcgcggtgccttgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgccttgcagagaagttgcccgatgaaaaagaccgtcctggccttcagccgtatcacc > 2:366539‑M1/1‑30 (MQ=255) ggTCCCTTCGCGGGCAAGCCCGCTCCTACgggggggcgcggtgccttgtaggagcgggcttgcccgcgaaggtgccagcacagccccaccccgccttgcagagaagttgcccgatgaaaaagaccgtcctggccttcagccgtatcaccc > 2:570538‑M1/1‑29 (MQ=255) gTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCGCCCGCATTGCAGCAGCTGTTTAGTTGGCGAta > 1:207437/1‑149 (MQ=255) gTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATc > 2:479988/1‑150 (MQ=255) cTTCGCGGGCAAGCCCGCTCCTACaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgccttgcagagaagttgcccgatgaaaaagaccgtcctggccttcagccgtatcaccccggcc > 1:69643‑M1/1‑24 (MQ=255) cTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgccttgcagagaa < 1:156741‑M2/100‑59 (MQ=255) cTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgccttgcagagaa > 2:156741‑M2/1‑42 (MQ=255) gcgGGCAAGCCCGCTCCTACaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgccttgcagagaagttgcccgatgaaaaagaccgtcctggccttcagccgtatcaccccggccatgg < 2:341325‑M1/150‑131 (MQ=255) gggCAAGCCCGCTCCTACaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgccttgcagagaagttgcccgatgaaaaagaccgtcctggccttcagccctccctccccggccatggac < 2:8699‑M1/150‑133 (MQ=255) aaGCCCGCTCCTACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgccttgcagagaatttgcccgatgaaaaagaccgtcctggccttcagccgtatcaccccggccatggccgaac < 1:224817‑M2/150‑119 (MQ=255) GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCa < 2:2614‑M1/135‑1 (MQ=255) GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCa > 1:2614‑M1/1‑135 (MQ=255) GCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGttt < 2:178894‑M1/150‑1 (MQ=255) GCCCGCTCCTACGGGGGGGAGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGttt < 2:600249‑M1/150‑1 (MQ=255) cccGCTCCTACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgc < 1:624754‑M2/76‑48 (MQ=255) cccGCTCCTACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgc > 2:624754‑M2/1‑29 (MQ=255) tACGGGGGGGCGCGGTGCCTTgtaggagcgggcttgcccgcgaagggaccagcacagccccaccccgccttgcagagaagttgcccgatgaaaaagaccgtcctggccttcagccgtatcaccccggccatggccgaacgcctgcagcaa < 2:320877‑M2/150‑130 (MQ=255) TACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATc > 2:561384‑M1/1‑125 (MQ=255) TACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATc < 1:561384‑M1/125‑1 (MQ=255) | GGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTG > NC_002947/1442987‑1443282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |