| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1526707 | 19 (0.760) | 7 (0.300) | 7/246 | 1.8 | 27.6% | coding (852/957 nt) | ddlB | D‑alanine‑‑D‑alanine ligase B |
| ? | NC_002947 | = 1526720 | 19 (0.820) | coding (865/957 nt) | ddlB | D‑alanine‑‑D‑alanine ligase B | |||||
CGGGCTGGATAGCGTCAAGGAACAGGAACTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGTTAATAACCATGCAAGGCGCGATGATACGT > NC_002947/1526560‑1526838 | cGGGCTGGATAGCGTCAAGGAACAGGAACTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑At < 2:417737/150‑1 (MQ=255) tGGATAGCGTCAAGGAACAGGAACTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAg > 1:24462/1‑150 (MQ=255) aggaacTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCa > 1:456807/1‑150 (MQ=255) cTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCTATGATCTG‑TCATcctggtgcggtgttga > 1:300365‑M2/1‑134 (MQ=255) cTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCtatgatctgtcatgcctgg < 1:431408‑M1/130‑20 (MQ=255) cTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCtatgatctgtcatgcctgg > 2:431408‑M1/1‑111 (MQ=255) cTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCg > 2:319591/1‑150 (MQ=255) cgcCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGa < 1:319591/150‑1 (MQ=255) ttcGATGCCAATGGCATCGCAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTAGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTc > 2:286476/3‑150 (MQ=255) tGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCtatgatctgtcatgcctggt < 2:96453‑M1/111‑21 (MQ=255) tGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCtatgatctgtcatgcctggt > 1:96453‑M1/1‑91 (MQ=255) aTCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATggcg < 1:401130/111‑1 (MQ=255) aTCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATggcg > 2:401130/1‑111 (MQ=255) ggCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATc < 1:194748/150‑1 (MQ=255) ggggCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGc < 2:379499/150‑1 (MQ=255) ggggCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGACCATGTCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGc < 2:208586/150‑1 (MQ=255) ggTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCtatgatctgtcatgcct < 1:521667‑M1/82‑18 (MQ=255) ggTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGCtatgatctgtcatgcct > 2:521667‑M1/1‑65 (MQ=255) gACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTg < 2:24462/150‑1 (MQ=255) aCGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTgg < 1:514552/150‑1 (MQ=255) aGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCATCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAg < 2:456807/150‑1 (MQ=255) ggACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAgg > 1:529443/1‑150 (MQ=255) gACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGt > 2:229411/1‑150 (MQ=255) aaGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGTTAATAACCATGCAAGGCGCGATGATACg > 2:469379/1‑150 (MQ=255) tCAACACCGCACCAGGCatgacagatcatagcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaaccgcccccagccttcgatgccaatggcatcgcaggcgcgcgcggtcaggtcgatcag > 1:300365‑M1/1‑17 (MQ=255) aaCACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAgg > 1:433715/1‑116 (MQ=255) aaCACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAgg < 2:433715/116‑1 (MQ=255) aCCAGGC‑ATGA‑CAGATCATAgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaaccgcccccagccttcgatgccaatggca < 2:96453‑M2/111‑92 (MQ=255) aCCAGGC‑ATGA‑CAGATCATAgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaaccgcccccagccttcgatgccaatggca > 1:96453‑M2/1‑20 (MQ=255) ccAGGC‑ATGA‑CAGATCATAgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaaccgcccccagccttcgatgccaatggcatcgcaggcgcgcgcggtcag > 2:431408‑M2/1‑19 (MQ=255) ccAGGC‑ATGA‑CAGATCATAgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaaccgcccccagccttcgatgccaatggcatcgcaggcgcgcgcggtcag < 1:431408‑M2/130‑112 (MQ=255) aGGC‑ATGA‑CAGATCATAgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaacc > 2:521667‑M2/1‑17 (MQ=255) aGGC‑ATGA‑CAGATCATAgcctggtgcggtgttgacttcgagcagccagaaccggccctgctcgtcctgcatcacgtccaacc < 1:521667‑M2/82‑66 (MQ=255) | CGGGCTGGATAGCGTCAAGGAACAGGAACTGATCGACCTGACCGCGCGCGCCTGCGATGCCATTGGCATCGAAGGCTGGGGGCGGTTGGACGTGATGCAGGACGAGCAGGGCCGGTTCTGGCTGCTCGAAGTCAACACCGCACCAGGC‑ATGA‑CAGATCATAGCCTGGTGCCCATGGCGGCCCGTGCGGCTGGCCTGGACTTCCAGCAACTGGTGCTGGCAATCCTGGCCGAAAGCGTGGCGACGCGAGGTTAATAACCATGCAAGGCGCGATGATACGT > NC_002947/1526560‑1526838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |