| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3701419 | 16 (0.640) | 5 (0.210) | 4/254 | 2.7 | 21.6% | coding (116/1053 nt) | PP_3266 | hypothetical protein |
| ? | NC_002947 | = 3701458 | 21 (0.880) | coding (77/1053 nt) | PP_3266 | hypothetical protein | |||||
GATGCTGTTCACCGCCCGTGAAGCGAATGCCAGTTCATCGTCCTGTTTCAGGCCTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAACGCTTGACCAACGGAAATGCTGACGCCGAGTTGAACTTTGCGGCAGTTGGCGTCTCCACCGCATACCC > NC_002947/3701277‑3701543 | gATGCTGTTCACCGCCCGTGAAGCGAATGCCAGTTCATCGTCCTGTTTCAGGCCTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTg > 2:113058/1‑150 (MQ=255) ttCACCGCCCGTGAAGCGAATGCCAGTTCATCGTCCTGTTACAGGCCTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATAGCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTc > 1:598690/1‑150 (MQ=255) gCGAATGCCAGTTCATCGTCCTGTTTCAGGCCTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGa > 1:433111/1‑150 (MQ=255) tGCCAGTTCATCGTCCTGTTTCAGGCCTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTACCTGCCGGttccttgtccggtcgcactttcagagcgaccgaa < 2:122166‑M1/150‑35 (MQ=255) cAGTTCATCGTCCTGTTTCAGGCCTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCaaa > 1:8178/1‑150 (MQ=255) tCCTGTTTCAGGCCTTTGGGGTAGAAGTCCTTGCGCGAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTTCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAg > 1:124303/1‑150 (MQ=255) tCCTGTTTCAGGCCTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAg < 2:433111/150‑1 (MQ=255) ccTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGGTGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAACGc < 1:83408/150‑1 (MQ=255) tttGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAACGCtt < 2:360924/150‑1 (MQ=255) cTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGcctttgccggtcgcactttcagagcgaccgaacaaggaaccggcag > 1:139376‑M1/1‑74 (MQ=255) cTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGcctttgccggtcgcactttcagagcgaccgaacaaggaaccggcag < 2:139376‑M1/120‑47 (MQ=255) cTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGcctttgccggtcgcactttcagagcgaccgaacaaggaaccggca > 1:34805‑M1/1‑74 (MQ=255) cTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGcctttgccggtcgcactttcagagcgaccgaacaaggaaccggca < 2:34805‑M1/119‑46 (MQ=255) cTTGCCCCAGGGGCCATATCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGAGCGGCAAAGGCCGGCGAGGGTTCACAACGCTTGCCCAACGGaaacgt > 2:101702/1‑147 (MQ=255) cAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAACGCTTGACCAACGGAAATGCTGACGcc > 2:30116/1‑150 (MQ=255) cACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAGACCGGGACCAACGGAAATGCTGACGCCGAGTTGAACTTTGCg > 1:5875/1‑150 (MQ=255) gagaTACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGCCCGGCAAAGGCCGGCGAGGGTTCACAACGCTTGACCAACGGAAATGCTGACGCCGAGTTGAACTTTGCGGCAGtt < 2:598690/150‑1 (MQ=255) tGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTATGAAAGTGCGACCGGCAAAGGCGGGCGAGGGTTCACAACGCGTGACCAACGGAAATGCTGACGCCGAGTTGAACTTTGCGGCAGTTGGCGTCTCCa < 2:8178/150‑1 (MQ=255) gAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAACGCTTGACCAACGGAAATGCt < 1:75438/110‑1 (MQ=255) gAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAACGCTTGACCAACGGAAATGCt > 2:75438/1‑110 (MQ=255) gCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAACGCTTGACCAACGGAAATGCTGACGCCGAGTTGAACTTTGCGGCAGTTGGCGTCTCCACCGCATAccc < 1:113058/150‑1 (MQ=255) cTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGccggcagtgaggacggcagcgtgagcgatattcgcatcggtatctccgggtggcgctatggcccctggcgcaag < 2:139376‑M2/120‑75 (MQ=255) cTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGccggcagtgaggacggcagcgtgagcgatattcgcatcggtatctccgggtggcgctatggcccctggcgcaag > 1:139376‑M2/1‑46 (MQ=255) tGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGccggcagtgaggacggcagcgtgagcgatattcgcatcggtatctccgggtggcgctatggcccctggcgcaag < 2:34805‑M2/119‑75 (MQ=255) tGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGccggcagtgaggacggcagcgtgagcgatattcgcatcggtatctccgggtggcgctatggcccctggcgcaag > 1:34805‑M2/1‑45 (MQ=255) | GATGCTGTTCACCGCCCGTGAAGCGAATGCCAGTTCATCGTCCTGTTTCAGGCCTTTGGGGTAGAAGTCCTTGCGCCAGGGGCCATAGCGCCACCCGGAGATACCGATGCGAATATCGCTCACGCTGCCGTCCTCACTGCCGGTTCCTTGTTCGGTCGCTCTGAAAGTGCGACCGGCAAAGGCCGGCGAGGGTTCACAACGCTTGACCAACGGAAATGCTGACGCCGAGTTGAACTTTGCGGCAGTTGGCGTCTCCACCGCATACCC > NC_002947/3701277‑3701543 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |