| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1780109 = | 70 (1.210) | 17 (0.340) | 16/224 | 2.7 | 24.3% | intergenic (+26/+80) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| ? | NC_002947 | 1780171 = | 46 (0.930) | intergenic (+88/+18) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase | |||||
GGGCGCGTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1780275‑1780109‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACC > NC_002947/1780171‑1780319 GGGCGCGTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGT > 2:1031610/1‑150 GTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGT > 2:16558/1‑150 GTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGT > 1:873252/1‑150 TGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTG < 2:913011/150‑1 TGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCCGATCAACCCCTTCGCGGGCACGCCCGCTCCCCCCCGTCCACCGCGC‑ATTTCTAACGCAGCGCAGGACCCGTG > 2:1497947/1‑150 GCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGG < 2:323068/150‑1 GCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGG < 2:831285/150‑1 GGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGG < 1:1326457/150‑1 GCACTGGTTGCACCGCTGGCCGAATGGATCGAAGCGGCGGAGCGCATTCGCGCATTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGATC‑ATTTCAAGCACAACGCATCACCGGAGGGAGCGtg > 1:305340/1‑148 CACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCTACAGGTACTGCGCTG‑CGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGC < 1:124865/150‑1 ACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGG > 2:862788/1‑141 ACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGG < 1:862788/141‑1 GCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGG < 2:1387806/150‑1 CTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG < 2:1233687/150‑1 TGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGT > 1:728314/1‑83 TGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGT < 2:728314/83‑1 ATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGC < 2:1108557/76‑1 ATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGC > 1:1108557/1‑76 GCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCAT < 1:1387806/150‑1 TCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGC > 2:442993/1‑150 CCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAT > 1:1007603/1‑116 CCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGAT < 2:1007603/116‑1 CACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTC > 1:1378460/1‑112 CACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTC < 2:1378460/112‑1 CACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCA > 1:1271371/1‑150 ACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGG > 1:157464/1‑122 ACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGG < 2:157464/122‑1 TTTCAAGCGCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCC < 1:1368601/87‑1 TTTCAAGCGCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCC > 2:1368601/1‑87 TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGT > 1:177598/1‑114 TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGT < 2:177598/114‑1 GCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCC < 1:1233687/150‑1 AGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACT < 1:442993/150‑1 ACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC > 1:1182290/1‑82 ACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC < 2:1182290/82‑1 CTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACG > 1:1014990/1‑150 TGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGC < 1:1240268/150‑1 TGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCTGTGCCATGCGCACGCGTCCGGCACCCGGGTTCACCCCATCCACTTCACGCGA < 1:116804/150‑1 GGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACA < 2:106779/150‑1 GAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAGGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTT > 2:635916/1‑126 GAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTT < 1:635916/126‑1 GCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGT < 2:306016/150‑1 GTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACC > 1:956943/1‑150 GGGCGCGTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1780275‑1780109‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACC > NC_002947/1780171‑1780319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |