New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1583554	51 (0.680)	4 (0.060)	4/242	NT	6.6%	intergenic (+68/+50)	ttgR/PP_1388	HTH‑type transcriptional regulator TtgR/EmrB/QacA family drug resistance transporter
	?	NC_002947	= 1583575	64 (0.900)					intergenic (+89/+29)	ttgR/PP_1388	HTH‑type transcriptional regulator TtgR/EmrB/QacA family drug resistance transporter

TCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1583407‑1583554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTC  <  NC_002947/1583575‑1583427                                                                                                                                                                                                                                                                                                           TCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATCTCATTCACTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTTCTCTTGGTGTTAATGTGGTATTAAGTGCATGGCCGgccc                                                                                                                                                     >  2:739794/1‑146                                 GACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCAT                                                                                                                         <  1:1896928/146‑1                                 GACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCAT                                                                                                                         >  2:1896928/1‑146                                  ACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCT                                                                                                                    >  2:1249875/1‑150                                       GGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATA                                                                                                               <  1:1249875/150‑1                                                                                                                                                CCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATT      >  1:1361107/1‑150                                                                                                                                                CCGCCTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATT      >  2:1730820/1‑150                                                                                                                                                    CTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTC  >  1:609506/1‑150                                                                                                                                                    CTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTC  <  2:609506/150‑1                                                                                                                                                                                                                                                                                                           TCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCTTTGTGTTAAGGGGGTATTAAGGGCATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1583407‑1583554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTTGTGCTGCGAACAGCCGCAGGGCGGCCATGCCCTTAATACCCCCTTAACACAAAGGGGAAACACTCCCTCACAATCCTTAACAAAGTGTCATTTGCGCAGAGCCGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTC  <  NC_002947/1583575‑1583427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.