| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1936932 | 48 (0.640) | 4 (0.060) | 4/236 | NT | 8.5% | intergenic (+42/+48) | PP_1736/PP_1737 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1936953 | 41 (0.590) | intergenic (+63/+27) | PP_1736/PP_1737 | hypothetical protein/hypothetical protein | |||||
GGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCGGGTGAACCCGCTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1936779‑1936932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcctgcACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGCAATAGCTG < NC_002947/1936953‑1936806 GGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCGGGTGAACCCGCTC < 2:356276/150‑1 CAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCGGGTGAACCCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCG > 1:1131541/1‑148 CAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCGGGTGAACCCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCG < 2:1131541/148‑1 TGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCGGGTGAACCCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGG < 1:613709/84‑1 TGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCGGGTGAACCCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGG > 2:613709/1‑84 ctctCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGCATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCAC < 1:1474786/146‑1 GCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTGCACCCGCGAAAGGGCGCGCAAAGGCACCCTCAAATCACCACGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGCAA < 2:855521/150‑1 CTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGCAAT > 2:591413/1‑150 CCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGCAATAG < 1:1457780/150‑1 TGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCC < 1:517698/75‑1 TGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCC > 2:517698/1‑75 GCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGCAATAGCTG < 1:1555416/150‑1 GGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCGGGTGAACCCGCTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1936779‑1936932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcctgcACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGCAATAGCTG < NC_002947/1936953‑1936806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |