| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2755123 | 56 (0.750) | 4 (0.060) | 7/240 | NT | 6.8% | coding (1406/3147 nt) | czcA‑II | cation efflux system protein |
| ? | NC_002947 | = 2755134 | 56 (0.790) | coding (1417/3147 nt) | czcA‑II | cation efflux system protein | |||||
ATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2754969‑2755123‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccctCGACCCCGGTC‑AGGGCAAAGATCGGCAGGTACACCACCATGATGATCAACTGCCCATAGATCAGCGGCCGGCGTGCTTCGCGGGCAGCGGCAAACACCTCATGGAACCGTTCGCCGCGGGTCAGCATGCGACCGTGGCGCTGCTG < NC_002947/2755134‑2754990 tttCGTCGCCTGGCCCATGTCCAGCAGCGCCACGGTCGCATTCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATTTTT < 2:742688/147‑1 CCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGC < 1:1587969/150‑1 CCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGC > 2:1866558/1‑150 CATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCTCGACCCCGGT > 2:1290034/1‑150 TCATGGTGGTGTACCTGCCGATCTTTGCCCTCGACCCCGGTC‑AGGG > 1:1002446/1‑46 TCATGGTGGTGTACCTGCCGATCTTTGCCCTCGACCCCGGTC‑AGGG < 2:1002446/46‑1 CTGCCGATCTTTGCCCT‑GACCGGGGTCGAGGGCAAAGATCGGCAGGTACACCACCATGATGATCAACTGCCCATAGATCAGCGGCCGGCGTGCTTCGCGGGCAGCGGCAAACACCTCATGGAACCGTTCGCCGCGGGTCAGCATGCGACC > 1:1290034/1‑150 GATCTTTGCCCT‑GACCGGGGTCGAGGGCAAAGATCGGCAGGTACACCACCATGATGATCAACTGCCCATAGATCAGCGGCCGGCGTGCTTCGCGGGCAGCGGCAAACACCTC > 1:612728/1‑112 GATCTTTGCCCT‑GACCGGGGTCGAGGGCAAAGATCGGCAGGTACACCACCATGATGATCAACTGCCCATAGATCAGCGGCCGGCGTGCTTCGCGGGCAGCGGCAAACACCTC < 2:612728/112‑1 ATCTTTGCCCT‑GACCGGGGTCGAGGGCAAAGATCGGCAGGTACACCACCATGATGATCAACTGCCCATAGATCAGCGGCCGGCGTGCTTCGCGGGCAGCGGCAAACACCTCATGGAACCGTTCGCCGCGGGTCAGCATGCGACCGTGGCG > 1:1298447/1‑150 TTGCCCTCGACCCCGGTC‑AGGGCAAAGATCGGCAGGTACACCACCATGATGATCAACTGCCCATAGATCAGCGGCCGGCGTGCTTCGCGGGCAGCGGCAAACACCTCATGGAACCGTTCGCCGCGGGTCAGCATGCGACCGTGGCGCTGC > 1:227624/1‑150 GCCCTCGACCCCGGTC‑AGGGCAAAGATCGGCAGGTACACCACCATGATGATCAACTGCCCATAGATCAGCGGCCGGCGTGCTTCGCGGGCAGCGGCAAACACCTCATGGAACCGTTCGCCGCGGGTCAGCATGCGACCGTGGCGCTGCTG < 2:697274/150‑1 ATCCGTCGCCTGGCCCATGCCCAGCAGCGCCACGGTCGCATGCTGACCCGCGGCGAACGGTTCCATGAGGTGTTTGCCGCTGCCCGCGAAGCACGCCGGCCGCTGATCTATGGGCAGTTGATCATCATGGTGGTGTACCTGCCGATCTTTGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2754969‑2755123‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccctCGACCCCGGTC‑AGGGCAAAGATCGGCAGGTACACCACCATGATGATCAACTGCCCATAGATCAGCGGCCGGCGTGCTTCGCGGGCAGCGGCAAACACCTCATGGAACCGTTCGCCGCGGGTCAGCATGCGACCGTGGCGCTGCTG < NC_002947/2755134‑2754990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |