New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3303921 =	75 (1.010)	4 (0.060)	5/240	NT	5.3%	coding (514/1383 nt)	cysS	cysteine‑‑tRNA ligase
	?	NC_002947	3303954 =	73 (1.040)					coding (547/1383 nt)	cysS	cysteine‑‑tRNA ligase

AATGTCGAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3304076‑3303921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgtcCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGAGT  >  NC_002947/3303954‑3304101                                                                                                                                                                                                                                                                                                                  AATGTCGAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGAGGCCTGCTTGGC                                                                                                                                                            >  1:1240652/1‑150       GAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTC                                                                                                                                                      <  2:378165/150‑1       GAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTC                                                                                                                                                      >  1:1237513/1‑150                             GTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTC                                                                                                                                                         >  1:1756716/1‑125                             GTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTC                                                                                                                                                         <  2:1756716/125‑1                                               TCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGCCAAGCAGGACCCGCTCGACTTCGTCCTGT                                                                                                                                                  >  1:232043/1‑114                                               TCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGCCAAGCAGGACCCGCTCGACTTCGTCCTGT                                                                                                                                                  <  2:232043/114‑1                                                                                                                            GACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTC                                 >  1:1397523/1‑150                                                                                                                            GACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGG                                                                                               <  1:1258821/88‑1                                                                                                                            GACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGG                                                                                               >  2:1258821/1‑88                                                                                                                                  GTCGAGCGGGTCCTGCTTGGCTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATT                           >  1:1745371/1‑150                                                                                                                                                      CTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGA          <  1:1652667/147‑1                                                                                                                                                      CTTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGA          >  2:1652667/1‑147                                                                                                                                                       TTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTG      >  1:1192243/1‑150                                                                                                                                                       TTCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTG      >  2:329310/1‑150                                                                                                                                                        TCGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGG     >  2:617782/1‑150                                                                                                                                                         CGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGA    <  2:1320178/150‑1                                                                                                                                                         CGTCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGA    <  1:1118622/150‑1                                                                                                                                                           TCCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGAGT  >  1:412129/1‑150                                                                                                                                                                                                                                                                                                                  AATGTCGAAGCTCTCGCCCAGGCAGCAGGTGGACATGACCGAGCACTCGATGTGCCAGCCCGGGCGACCCGGGCCCCATGGCGATTCCCAGCTTGGCTCGCCCGGCTTGACGCCCTTCCACAGGACGAAGTCGAGCGGGTCCTGCTTGGCTTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3304076‑3303921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgtcCTGTGGAAGGGCGTCAAGCCGGGCGAGCCAAGCTGGGAATCGCCATGGGGCCCGGGTCGCCCGGGCTGGCACATCGAGTGCTCGGTCATGTCCACCTGCTGCCTGGGCGAGAGCTTCGACATTCACGGTGGCGGCAGCGACCTGGAGT  >  NC_002947/3303954‑3304101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.