New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3513532	58 (0.780)	6 (0.080)	5/244	NT	9.2%	coding (2157/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	= 3513567	63 (0.880)					coding (2192/4158 nt)	PP_3108	rhs family protein

CACCACGCTGGCGCGCAAGCCCGACGGCGAAGTGCTGCGCATCAGCCACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3513382‑3513532 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGTGCGCATCAGGCGGGTGGTCTGGCCCTTGCCGTCGGTGTGGCTGAGCACCTGACCGTAGACGTTGTAGGTGAAGCTTTCCGTGGTGCCGTCCGGGTGGCTGAT  <  NC_002947/3513567‑3513422                                                                                                                                                                                                                                                                                                           CACCACGCTGGCGCGCAAGCCCGACGGCGAAGTGCTGCGCATCAGCCACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGTCAAGGTCCAGACCACCCGCCTGATGCGCACGGCCCc                                                                                                                                                     >  2:310929/1‑149                                              CCACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACCCCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGT                                                                                                        <  1:1916442/150‑1                                              CCACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGT                                                                                                        <  2:1722036/150‑1                                              CCACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGACCCGCTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGT                                                                                                        >  1:1335708/1‑150                                               CACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGACCCGCTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGTG                                                                                                       <  2:1335708/150‑1                                                                                                                    AAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGTGC                                                                                                      <  1:286580/82‑1                                                                                                                    AAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGTGC                                                                                                      >  2:286580/1‑82                                                                                                                                                    CCGCTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGTGCGCATCAGGCGGGTGGTCTGGCCCTTGCCGTCGGTGTGGCTGAGCACCTGACCGTAGACGTTGTAGGTGAAGCTTTCCGTGGTGCCGTCCGGGTGGCTGAT  >  1:310929/1‑150                                                                                                                                                                                                                                                                                                           CACCACGCTGGCGCGCAAGCCCGACGGCGAAGTGCTGCGCATCAGCCACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3513382‑3513532 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcTGGCCCTTGGCATCCTGGCGGCTGCTCGGCAGGCCGCGGGCCGTGCGCATCAGGCGGGTGGTCTGGCCCTTGCCGTCGGTGTGGCTGAGCACCTGACCGTAGACGTTGTAGGTGAAGCTTTCCGTGGTGCCGTCCGGGTGGCTGAT  <  NC_002947/3513567‑3513422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.