New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3797037 = | 85 (1.140) | 5 (0.070) | 5/242 | NT | 6.2% | coding (1000/1449 nt) | vdh | vanillin dehydrogenase |
? | NC_002947 | 3797067 = | 70 (0.990) | coding (970/1449 nt) | vdh | vanillin dehydrogenase |
ATCTGCATGTCCACCGAGCGCCTTGTGGTGGACAGCTGTATTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGCCGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCTCGGTGCTCGGCTCGCTGGTCAGCGCAGCGGCCGGCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3797190‑3797037 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgagcCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGCGATCTTCACCGCCAGCTTGTCGACGAAAGCGTCGGCAATACAGCTGTCCACCACAAGGCGCTCGGTGGACATGCAGATCTGCCCCTGGTTGAAGTAGGCACCG > NC_002947/3797067‑3797215 ATCTGCATGTCCACCGAGCGCCTTGTGGTGGACAGCTGTCTTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGCCGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCTCGGTGCTCCGCTCGCTGGTCCGCGCAGCGGCCGGC > 2:547845/1‑150 TCTGCATGTCCACCGAGCGCCTTGTGGTGGACAGCTGTATTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGCCGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCTCGGTGCTCGGCTCGCTGGTCAGCGCAGCGTCCGGCG > 2:1385380/1‑150 CTGCATGTCCACCGAGCGCCTTGTGGTGGACAGCTGTATTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGCCGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCTCGGTGCTCGGCTCGGTGGTCAGCGCAGCGGCCGGCGA > 1:1031070/1‑150 CTGCATGTCCACCGAGCGCCTTGTGGTGGACAGCTGTATTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGCCGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCGCGGTGCTCGGCTCGCTGGTCAGCGCAGCGGCCGGCGA > 1:568165/1‑150 tgcgcGTCCACCGAGCGCCTTGTGGTGGACAGCTGTATTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGACGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCTCGGTGCTCGGCTCGCTGGTCAGCGCAGCGGCCGGCGAG < 2:943379/145‑1 GCATGTCCACCGAGCGCCTTGTGGTGGACAGCTGTATTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGCCGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCTCTGTGCTCGGCTCGCTGGTCAGCGCAGCGGCCGGCGAGC > 2:1737788/1‑150 GCATGTCCACCGAGCGCCTTGTGGTGGACAGCTGTATTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGCCGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCTCGGTGCTCGGCTCGCTGGTCAGCGCAGCGGCCGGCGAGC > 1:597951/1‑150 TCGGCTCGCTGGTCAGCGCAGCGGCCGGCGAGCCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGC < 1:1681772/79‑1 TCGGCTCGCTGGTCAGCGCAGCGGCCGGCGAGCCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGC > 2:1681772/1‑79 GCTCGCTGGTCAGCGCAGCGGCCGGCGAGCCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGCGATCTTCACCGCCAGCTTGTCGACGA < 1:1878446/102‑1 GCTCGCTGGTCAGCGCAGCGGCCGGCGAGCCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGCGATCTTCACCGCCAGCTTGTCGACGA > 2:1878446/1‑102 CGCTGGTCAGCGCAGCGGCCGGCGAGCCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGCGATCTTCACCGCCAGCTTGTCGACGAAAGCGTCGGCAATACAGCTGTCCACCACAAGGCGCTCGGTGGACATGCAGA > 2:455971/1‑150 GAGCCGAGCACCGAGGTGCTGGCTTGCGGATCCCCTGCACGCAGCCCGGCGATCTTCACCGCCAGCTTGTCGACGAAAGCGTCGGCAATACAGCTGTCCACCACAAGGCGCTCGGTGGACATGCAGATCTGCCCCTGGTTGAAGTAGGCA < 2:432645/150‑1 AGCCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGCGATCTTCACCGCCAGCTTGTCGACGAAAGCGTCGGCAATACAGCTGTCCACCACAAGGCGCTCGGTGGACATGCAGATCTGCCCCTGGTTGAAGTAGGCAC < 1:455971/150‑1 CCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGCGATCTTCACCGCCAGCTTGTCGACGAAAGCGTCGGCAATACAGCTGTCCACCACAAGGCGCTCGGTGGACATGCAGATCTGCCCCTGGTTGAAGTAGGCACCG > 2:1423988/1‑150 ATCTGCATGTCCACCGAGCGCCTTGTGGTGGACAGCTGTATTGCCGACGCTTTCGTCGACAAGCTGGCGGTGAAGATCGCCGGGCTGCGTGCAGGTGATCCGCAAGCCAGCACCTCGGTGCTCGGCTCGCTGGTCAGCGCAGCGGCCGGCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3797190‑3797037 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgagcCGAGCACCGAGGTGCTGGCTTGCGGATCACCTGCACGCAGCCCGGCGATCTTCACCGCCAGCTTGTCGACGAAAGCGTCGGCAATACAGCTGTCCACCACAAGGCGCTCGGTGGACATGCAGATCTGCCCCTGGTTGAAGTAGGCACCG > NC_002947/3797067‑3797215 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |